Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 616 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella loihica PV-4

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 96/396 (24%), Positives = 163/396 (41%), Gaps = 70/396 (17%)

Query: 32  VDLSGGSTIVL----------QTESELSESEMTTVNEILTSRLNTNGLSDVRIYPRGSDE 81
           VD S GS  +L          Q + E  +  +TT    L +R+N  G+++  +  +G++ 
Sbjct: 202 VDASSGSDFMLLANMSEIYLKQVKEEALQQNITT----LRNRVNELGVAEPVVQRQGAER 257

Query: 82  IVIEIPESADLERIQKIL----------TQQGVFTAVIDNQTAYTGQDVSYVEEPGMTA- 130
           I++E+P   D  R + IL            +    A I       G  +    E G  A 
Sbjct: 258 IIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAIAAGRVSPGSQIYDRREGGKVAL 317

Query: 131 ---------------------SGYGVGFKLTLDGAQKFADVAYGKGGYPVELYMDEKAIS 169
                                S   V   L   G   F++V     G P+     E   +
Sbjct: 318 QKEVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDN 377

Query: 170 APLLSADLADGNIHQN---QVITVA------GSNPTEEDID--EAWVIYTALKSGSLPVK 218
                A   DG++  +   +VI+VA      G N     +D  EA  +   L++G+L   
Sbjct: 378 G----AKNPDGSVKMDKIEEVISVATIQARLGRNFVINGLDHSEAQSLALLLRAGALIAP 433

Query: 219 VHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLI 278
           V I    ++ P+LG+E I   + A I+    V   +   Y+   ++  + +T  + ++++
Sbjct: 434 VSIVEERTIGPSLGAENIDNGLQAMIWGMAVVLIFMLVYYRGFGLIANLALT--ANLVMV 491

Query: 279 LGFASLIDWK-LDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKRAF 331
           +G  S+I    L L  IAG++  VG  VD  ++I     +E  +G +  + + +    AF
Sbjct: 492 VGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAF 551

Query: 332 FIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGV 367
             I  A  TT    L LF +G G +KGFA+T + G+
Sbjct: 552 STIADANITTFMTALILFAVGTGAVKGFAVTLMIGI 587