Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 294 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 33/236 (13%)

Query: 155 GGYPVELYMDEKAISA---PLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALK 211
           GG   E+ +D K  S+   PLL+A       +Q  V  ++ S P        WV+  A  
Sbjct: 41  GGVVTEVQLDRKITSSELQPLLNA------AYQQDVSVISASEPGR------WVLRYADT 88

Query: 212 SGS--------LPV-KVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPK 262
           + S         P+ +V +   S V P +G E  +   +A + A +A+   +S+R++  +
Sbjct: 89  AQSHVDIAQTLAPLGEVQVLNTSVVGPQVGKELAEQGGLALLVAMLAILGYLSYRFEW-R 147

Query: 263 IVLPILITGFSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITD---ETISGE 319
           +    L     +V+ +L F SL   + +L  +A ++A +G  ++  I+I D   E +  +
Sbjct: 148 LASGALFALVHDVMFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAK 207

Query: 320 AKKVTKSIKR-----AFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
            K   + I        F      + TT+  +  L++MG G L+GF+I    G+L G
Sbjct: 208 PKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTG 263



 Score = 34.3 bits (77), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 28/43 (65%)

Query: 11 ILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEM 53
          I +  +LASL ++  KG ++G+D +GG    +Q + +++ SE+
Sbjct: 16 ISIFLMLASLTIVCVKGFNWGLDFTGGVVTEVQLDRKITSSEL 58