Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 532 a.a., protein-export membrane protein SecD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 80/288 (27%), Positives = 123/288 (42%), Gaps = 26/288 (9%)

Query: 103 GVFTAVIDNQTAYTGQDVSYVEEPGMTASGYG-VGFKLTLDGAQKFADVAYGKGGYPVEL 161
           G     +D +   TG++V+    PG        V       GA  F  V        + +
Sbjct: 245 GEVPVALDKEILLTGENVADAR-PGFDQFNQAYVMLTFNSRGAAIFERVTGENVRKRLAI 303

Query: 162 YMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSLPVKVHI 221
            +D K  SAP +   +A G        ++ G   TEE  D A V    L++GSLP  V++
Sbjct: 304 VLDGKVYSAPSIQEKIAGGRA------SITGHFTTEEAQDLAIV----LRAGSLPAPVNV 353

Query: 222 EYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEVLLILGF 281
               +V P+LG E I   ++AG     AV  V +  Y      + + +  F+ +L++ G 
Sbjct: 354 LEERTVGPSLGQESIDSGILAGQVGGAAV-VVFTILYYGASGAIAVGMLCFTILLILAGM 412

Query: 282 ASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEAKK-------VTKSIKRAFFII 334
           A      L L  +AGI   +G GVD  ++I  E I  E ++       +     RA   I
Sbjct: 413 AG-FGATLTLPGLAGIALTIGMGVDANVLIY-ERIREELRRGLTPLAAIHAGFDRAMLSI 470

Query: 335 FGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVL----MGISISRPAF 378
             +  TT+ A   L+  G G ++GFA+T   G+L      I +SR  F
Sbjct: 471 TDSNLTTVIAAAILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRAVF 518