Pairwise Alignments

Query, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

Subject, 315 a.a., preprotein translocase subunit SecF (RefSeq) from Shewanella sp. ANA-3

 Score = 58.9 bits (141), Expect = 2e-13
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 23/227 (10%)

Query: 158 PVELYMDEKAISAPLLSADLADGNIHQN------QVITVAGSNPTEEDIDEAWVIYTALK 211
           PV+L +    +SAP L     DG + QN       ++ ++       D+    V+  A +
Sbjct: 59  PVDLNVLRTKLSAPEL-----DGAVVQNFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQ 113

Query: 212 SGSLPVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITG 271
             +   +  +E+   V P +G E  +   +A + A I +   +SFR++  ++    +   
Sbjct: 114 VDAGVQQKRVEF---VGPQVGKELAEQGGLAVLVALICIMIYVSFRFEW-RLAFGSVAAL 169

Query: 272 FSEVLLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVITDETISGEAKK--------V 323
             +V++ LG  S+   + DL  +AG++  VG  ++  IV+ D       K         V
Sbjct: 170 AHDVIVTLGVFSVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVV 229

Query: 324 TKSIKRAFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGVLMG 370
             SI +          TT+  ++ LF+ G  M+ GFA   + G+ +G
Sbjct: 230 NVSITQTMSRTIITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVG 276



 Score = 31.2 bits (69), Expect = 4e-05
 Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 10  VILLVCVLASLLLIAFKGISFGVDLSGGSTIVLQTESELSESEMTTVNEILTSRLNTNGL 69
           ++  + V  SL+ +A KGI++G+D +GG+ +      E+  ++   +N +L ++L+   L
Sbjct: 22  IMSAILVFGSLVSLATKGINWGLDFTGGTVV------EMEFTQPVDLN-VLRTKLSAPEL 74

Query: 70  SDVRIYPRGSDEIV---IEIPE--SADLERIQKILTQQGVFTAVIDNQTAYTGQDV 120
               +   GS   V   + + E  S+D++    +   Q V   V   +  + G  V
Sbjct: 75  DGAVVQNFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQKRVEFVGPQV 130