Pairwise Alignments

Query, 224 a.a., hydrogenase nickel incorporation protein HypB from Methanococcus maripaludis S2

Subject, 264 a.a., hydrogenase accessory protein HypB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  151 bits (382), Expect = 1e-41
 Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 2/217 (0%)

Query: 7   LNIGKDIIKANNKNADKNRKILEDHGIVAFDFMGAIGSGKTLLIEKLINELKDEYKIACI 66
           L++   I+  N+  A  NR   E H I AF+ M + GSGKT L+E L    K  Y  A I
Sbjct: 48  LSVIHKILDKNDVEAAHNRAHFEAHHITAFNLMSSPGSGKTTLLEHLKEYTKLNY--AVI 105

Query: 67  AGDVIAKYDAGRMEKHGVKVIPLNTGKECHLDAHQIGHCFHDLDLDNLDIIFIENVGNLI 126
            GD+    DA R+   G+K   + TG  CHLDA  +    H L L+ +DI F+ENVGNL+
Sbjct: 106 EGDLETSRDADRLIAKGIKAHQIQTGSACHLDAFMVHGALHHLPLEGVDICFVENVGNLV 165

Query: 127 CPTDFDLGTHKRTVVVSVTEGDDTVEKHPEIFKTANLTIINKIDISEAVGADPQKMLNDA 186
           CP  +D+GTHK  V++SV EGDD +EK+P +F+ A+L +I K D+         +     
Sbjct: 166 CPASYDVGTHKNIVLLSVPEGDDKIEKYPVMFRRADLVLITKCDLLPYFDFSVDEAKTQL 225

Query: 187 KKINKDMEVLLTAIKHDNGVSDVVNFIKKTIEEVKAQ 223
           KK+N + ++L  +IK  + +  V  ++   +     +
Sbjct: 226 KKLNPNTQILEVSIKDGDSMHAVAAWLNSNLRPASGE 262