Pairwise Alignments

Query, 453 a.a., sodium:alanine symporter family protein from Methanococcus maripaludis S2

Subject, 495 a.a., sodium:alanine symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  306 bits (784), Expect = 1e-87
 Identities = 175/458 (38%), Positives = 258/458 (56%), Gaps = 25/458 (5%)

Query: 6   LVNTVNSFVWGPYMLVLLLGTGIFLTLRLGFMQIHTLPYALKLAFSKHQDETSEGDISHF 65
           +VN VN+ VW P ++ L LG G+F +LR  F+Q+  LP  ++L F     ++++  +S F
Sbjct: 4   IVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFD---GKSTDAGVSSF 60

Query: 66  QALMTALAATIGTGNIAGVATAYVLGGPGAIFWMWVTAFFGMATKYAEAVLAIKYRTVDD 125
           QAL   LA  +GTGNIAGVATA   GGPGA+FWMW+ AF G ++ + E+ L   Y+    
Sbjct: 61  QALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKE-KI 119

Query: 126 NGEMAGGPMYFLEKGLPDHGLGKILGVAFAFFGAFAAFGIGNMVQTNSVADAVASNFGVD 185
           NGE  GGP +++EKGL   G+ K     FA    FA   +   VQ NS+  ++ + F +D
Sbjct: 120 NGEYRGGPAFYIEKGL---GM-KWYAWTFAIATIFACGVLLPGVQANSIGASLKTAFDID 175

Query: 186 PLITGFVLAIFTAAVILGGIKSIGKATGIIVPFMAVFYILAGLVILAMNIGYIIPAFGTI 245
           P +T  VLA+    +I GG+K I     ++VPFMA+ YI+   VI+A+NI  +      I
Sbjct: 176 PNVTAAVLAMLLGFIIFGGVKRIANFATLVVPFMALGYIIVACVIIALNIDQLPGILWLI 235

Query: 246 FSSAFNFSAGFGALIGTAIMWGVKRGVFSNEAGLGSAPIAAAAAKTDHPGRQALVSMTGT 305
             SAF F AGFGA++G AIMWGVKRGV+SNEAG G+ P A++AA   HP +Q LV     
Sbjct: 236 IKSAFGFDAGFGAILGLAIMWGVKRGVYSNEAGQGTGPHASSAAAVTHPAKQGLVQAFSV 295

Query: 306 FLDTIVVCTITGLVLTIAGL---------KAFPGLTDL-TGASLTAASFDALMP-MGGLI 354
           ++DT+ VC+ TG +L I GL           + G+  +  G+     + +++MP  G + 
Sbjct: 296 YIDTLFVCSATGFMLLITGLYNVQGPDGAALYTGIAGVAAGSGYVQTAMESMMPGFGNMF 355

Query: 355 VTIGLVFFAYSTVLGWSYYGEKCFEYLIGTKGIR-----LYRIAFVLVAFWGATASLPLV 409
           V I L FFA++T++ + Y  E    Y I  K  R     + ++  +    +G   +  L 
Sbjct: 356 VAIALFFFAFTTIVAYYYIAETNIAY-INRKVNRPWLTVMLKVIIMASTVYGTVKTADLA 414

Query: 410 WNIADTLNGAMAIPNLIGLLLLSGVVVSETKAFNEIRK 447
           W + D   G MA  N+I ++LL  V  +  K +   +K
Sbjct: 415 WGMGDIGVGIMAWLNIIAIILLQKVAFTCLKDYESQQK 452