Pairwise Alignments

Query, 138 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 176 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 90.5 bits (223), Expect = 1e-23
 Identities = 52/158 (32%), Positives = 75/158 (47%), Gaps = 37/158 (23%)

Query: 10  CVDCKKCERACPINAIHVFDGI----------------------PIRCMHCEDAPCLNVC 47
           C+ C+ CE AC +   +   G                       PI+C HC+DAPCLN C
Sbjct: 12  CIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHCDDAPCLNAC 71

Query: 48  PEDAIEKIADKVVVHPEKCVGCALCAEVCPVGAIQI----------DRGTKVAVKCDGCI 97
           P  AI    D V V+  +C+GC  C   CP GA+Q+          D     A KCD CI
Sbjct: 72  PNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRRVEAHKCDLCI 131

Query: 98  ERGS-EVCLEVCPTKALDYYENTIENKRAELVSKLKKL 134
           ER +   C++ CPTK+L    + ++ +R + V + ++L
Sbjct: 132 ERAAGPACIDACPTKSL----HLVDRERVQEVLRKRQL 165



 Score = 32.0 bits (71), Expect = 5e-06
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 59  VVVHPEKCVGCALCAEVCPV-------GAIQID--------RGTKVA-----VKCDGCIE 98
           V+  P+KC+GC  C   C V       GA  +         R  K A     ++C  C  
Sbjct: 5   VIADPKKCIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHC-- 62

Query: 99  RGSEVCLEVCPTKALDYYENTIENKRA 125
                CL  CP  A+ Y  ++++  +A
Sbjct: 63  -DDAPCLNACPNGAIVYSHDSVQVNQA 88



 Score = 21.9 bits (45), Expect = 0.005
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 8   DLCVDCKK---CERACPINAIHVFD 29
           DLC++      C  ACP  ++H+ D
Sbjct: 128 DLCIERAAGPACIDACPTKSLHLVD 152