Pairwise Alignments

Query, 332 a.a., TIGR01212 family radical SAM protein from Methanococcus maripaludis S2

Subject, 309 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  168 bits (426), Expect = 1e-46
 Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 10/280 (3%)

Query: 30  ITQYGLYTKREKGYKTFKVAVDAGFSCPNKDGTIDTEGCIFCPKMGRVISVEYCNVK-YS 88
           +  +G   K + G +  K+ +DA F+CPN+DGT+   GC FC     V S  Y   +  S
Sbjct: 7   VNTFGAVCKAKYGERLRKLTIDAKFTCPNRDGTLGRGGCTFC----NVASFSYQQKETLS 62

Query: 89  LKEQIEHQIRRNKEK----GIEKFYVYFYPGTNTHASPEYLKELWDFALSFDDVLGISIG 144
           + EQ++    R KE       +KF  YF   T+T+   + L   +D A+   +++G+ +G
Sbjct: 63  ISEQLQQGKARYKEAKPKLNADKFIAYFQAYTSTYDEYQVLMSKYDEAVKDSEIVGLCVG 122

Query: 145 TRPDCLEDEKLDILENYVKEGYEIWIDLGIQTMHDKTLDFLNRKHSSDDVRRVLLECKKR 204
           TRPDC+ D  LD+L +Y  +G ++W++LG+QT +DKTL  +NR H+       +   + R
Sbjct: 123 TRPDCVPDNVLDLLASYQHKGVDVWLELGLQTANDKTLHHINRGHNFACYCDTVSRARSR 182

Query: 205 GILVCGHIILGLPDESWDMMMETAKILSDLEIDALKIYPLVVVENTKLEEIYWKGEYKSL 264
           G+ VC H+ILGLP E+    M T + +    +D LK++PL VVE + + +++  G    L
Sbjct: 183 GLKVCTHLILGLPGETPLDYMATLQAVLAQGVDGLKLHPLHVVEGSTMAKVWRAGRLPLL 242

Query: 265 DEKQYIHLVADFLEHISKYVIIQRVSKDKVPEEIKISPEW 304
             + Y     + + H  K +I  RV+     + I ++P+W
Sbjct: 243 TMEAYAASAGELIRHTPKEIIFHRVTA-YAKKPILLAPDW 281