Pairwise Alignments

Query, 447 a.a., S-layer protein from Methanococcus maripaludis S2

Subject, 1112 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 41/302 (13%)

Query: 139  IVLGNKVEDIDT-TEEFSY-DIYTFKIIGKDSTG-EVLVSVYEGTDRIENV-KMYPDDTY 194
            I+L N  ED    T+   Y D Y   IIG + TG  + ++ +  T    N+ ++ P+ T 
Sbjct: 805  ILLDNCCEDYSNITQNTIYADDYPI-IIGDNITGCNIYLNNFIYTGNSSNISEIMPNTT- 862

Query: 195  FVSGSTVSIYYDEYLESGDTAYFFFEIYDSLEFEDGKSISGYSDFDTEIDGQTIT---LE 251
             V+ S VS +  EY  +G+        Y ++    G   S YS  D + +G   T     
Sbjct: 863  -VNNSLVSPFEIEYKYNGNN-------YSNIL---GNYWSDYSGTDADSNGIGDTPYLYG 911

Query: 252  YDNPKSLSENFGLLNYKVN----LVDV-NGEDLTAFFTVTQNLNYEYDMDEGTKYFGNNI 306
             D  ++  E +  + Y  N    L+D+ NG ++  +   T   +       G + + ++I
Sbjct: 912  CDYERTYGEEYYDIEYLENDTAPLIDMWNGNEIGNYVAPTTPSSSH--SSSGGRSYDSDI 969

Query: 307  FAVKLENDEEDDWDDELYLYKNNKKYDKIVDYQGSVQLVDQDELLSA---SSDLILIGGP 363
                  +DE +    + ++      Y   +D + + +L ++ +  +    S + +++GGP
Sbjct: 970  ------SDEIESKVIKNFVSSAAVIYGNEIDQKFAEELRERIQNANGYKISGNAVIVGGP 1023

Query: 364  VSNKVTESIQNSLNIEVTNDYPGEGKGVIQTITNPNNA-----ESTILVLAGSDREGTKA 418
             +N   +   +   + ++NDYPGE KG+IQ +   +N        TI+ +AGSDR GT+A
Sbjct: 1024 NANGFAKEYNDQFEMPISNDYPGENKGIIQVLKVQDNTGKIVQSYTIVYIAGSDRLGTQA 1083

Query: 419  CV 420
             +
Sbjct: 1084 AL 1085