Pairwise Alignments

Query, 267 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (286), Expect = 2e-30
 Identities = 69/251 (27%), Positives = 131/251 (52%), Gaps = 5/251 (1%)

Query: 17  ILKAILILVLGYFAVKIVSSILENGAKKSKIPELVSEFVIKLFSAILYVFVILLAVGVFG 76
           ++ A+LI +LG +    +S+++    +K +I   +S FV  L   ++ V V ++A+G  G
Sbjct: 31  LVGALLIFLLGLWVANKISNLVAKQFEKHEIDITLSNFVSNLVRILIIVMVGVIALGKLG 90

Query: 77  VETGPIILGL-SASLGLILGFGLQDTLTNLTSGLWIAVMKPLDKDETVQIGGITGKIVEV 135
           +   P++  + +ASLG   G  LQ  L+N  +G+ I V +P     T++I G++G +  +
Sbjct: 91  ISITPMVAAIGAASLGA--GLALQGMLSNYAAGVTIIVTRPFVVGNTIEIQGVSGVVKSI 148

Query: 136 GIMATKLLTPDNVVITIPNKLVWGSPITNYTRMDLRRVDVAVGVSYGENLDNALSKALEL 195
            +  T L   +  VI+IPNK + G  + N     L  V++   +SY  + +  L+ A ++
Sbjct: 149 HLGLTLLTNEEGEVISIPNKHIVGEILHNSFSDKL--VEIRFNISYASDANQVLAIAQQV 206

Query: 196 ISEHPKVLKDPAPAVVVTGLGESSVDLQLRAWTKTGDYWGVKGDLTKGIYEKYGKEGIEI 255
           +  + +V ++ AP + + G     +++ LR W  T  Y+  K  +   +     + GIEI
Sbjct: 207 LDANEEVNQERAPQIGINGFNSIGLEIGLRYWVPTNRYYQNKYQVNLELINALRQAGIEI 266

Query: 256 PFPQMDIHVHK 266
           P P  +IH+ +
Sbjct: 267 PCPVREIHIER 277