Pairwise Alignments

Query, 267 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 1060 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score = 91.3 bits (225), Expect = 8e-23
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 4/214 (1%)

Query: 54   FVIKLFSAILYVFVILLA-VGVFGVETGPIILGLSASLGLILGFGLQDTLTNLTSGLWIA 112
            F I   S  L VF  +L+     G+E   +   L A+L + LGFGLQ+   N  SGL I 
Sbjct: 835  FAITTVSRYLVVFFGMLSGFSTLGMEWSKL-QWLVAALSVGLGFGLQEIFANFISGLIIL 893

Query: 113  VMKPLDKDETVQIGGITGKIVEVGIMATKLLTPDNVVITIPNKLVWGSPITNYTRMD-LR 171
              KP+   +TV I  +TG + ++ I AT ++  D   I +PNK      + N++  D + 
Sbjct: 894  FEKPVRIGDTVTIRELTGTVSKIQIRATTIVDWDRKEIIVPNKAFITEQLINWSLSDPIT 953

Query: 172  RVDVAVGVSYGENLDNALSKALELISEHPKVLKDPAPAVVVTGLGESSVDLQLRAWTK-T 230
            RV V V V+   +     +   + + E    L  P P V   G G+ + D ++RA+ K  
Sbjct: 954  RVIVYVSVARDSDPARVEAALYQAVKECDDALTTPEPEVWFAGFGQHTQDYEIRAYAKDM 1013

Query: 231  GDYWGVKGDLTKGIYEKYGKEGIEIPFPQMDIHV 264
               W ++  L K + +K  +  +E+ +PQ+++H+
Sbjct: 1014 NTRWPLRHKLHKQVSKKLRENHLELAYPQLEVHI 1047