Pairwise Alignments

Query, 267 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 1e-54
 Identities = 94/248 (37%), Positives = 149/248 (60%), Gaps = 3/248 (1%)

Query: 21  ILILVLGYFAVKIVSSILENGAKKSKIP--ELVSEFVIKLFSAILYVFVILLAVGVFGVE 78
           +LIL L + A K V  I++     SK+   +L+ +F + L    ++   +++A+   G E
Sbjct: 291 LLILFLAHLAGKAVQRIVKKMVSNSKLKFSKLLQDFFVSLSGKTVFALGLMIALSQLGFE 350

Query: 79  TGPIILGLSASLGLILGFGLQDTLTNLTSGLWIAVMKPLDKDETVQIGGITGKIVEVGIM 138
            GP++ G   + G+I+GF LQDTL+N  SG+ I + +P D  + +   G+TGK+ ++ ++
Sbjct: 351 LGPLLAGFGVA-GVIIGFALQDTLSNFASGMMILIYRPYDVGDLINAAGVTGKVSQMSLV 409

Query: 139 ATKLLTPDNVVITIPNKLVWGSPITNYTRMDLRRVDVAVGVSYGENLDNALSKALELISE 198
           +T + T DN  + IPN  +WG  I N T    RRVD+  G+ YG+N++ A      ++ E
Sbjct: 410 STTIKTLDNQRLIIPNNKIWGDTINNITVEHQRRVDMTFGIGYGDNIEKAEQVLRGIVDE 469

Query: 199 HPKVLKDPAPAVVVTGLGESSVDLQLRAWTKTGDYWGVKGDLTKGIYEKYGKEGIEIPFP 258
           HPKVLK P P V +  LGESSVD  +R W K  DYW V  D+T+ +  ++ +E I IPFP
Sbjct: 470 HPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPEDYWDVYWDITRAVKMRFDQEDISIPFP 529

Query: 259 QMDIHVHK 266
           Q D+H+++
Sbjct: 530 QRDVHIYQ 537