Pairwise Alignments

Query, 267 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  163 bits (413), Expect = 3e-45
 Identities = 85/248 (34%), Positives = 136/248 (54%), Gaps = 1/248 (0%)

Query: 17  ILKAILILVLGYFAVKIVSSILENGAKKSKIPELVSEFVIKLFSAILYVFVILLAVGVFG 76
           IL A++I  +G +   +   ++       K+   V  FV  L  A+++VF I+  +G  G
Sbjct: 22  ILFALVIFFVGKYFAGVAQKVVHKLLNSRKVDPTVVSFVANLSWAVVFVFTIIATLGQIG 81

Query: 77  VETGPIILGLSASLGLILGFGLQDTLTNLTSGLWIAVMKPLDKDETVQIGGITGKIVEVG 136
           V+T  ++  + A+ GL +G  LQ +L+N  SG+ + + +P    + ++  GI G + E+ 
Sbjct: 82  VQTASLVAVIGAA-GLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEAAGIAGTVDEIT 140

Query: 137 IMATKLLTPDNVVITIPNKLVWGSPITNYTRMDLRRVDVAVGVSYGENLDNALSKALELI 196
           I +TKL TPDN VI  PN  +    ITNY+  + RR+D+ + VSY  +L        E++
Sbjct: 141 IFSTKLRTPDNKVIVAPNSSIMNGTITNYSASENRRIDLVICVSYSADLAQTKKVLTEIL 200

Query: 197 SEHPKVLKDPAPAVVVTGLGESSVDLQLRAWTKTGDYWGVKGDLTKGIYEKYGKEGIEIP 256
             +  VLK+P   V ++ L  SS++  +R W KT DYW  + ++ + I        IEIP
Sbjct: 201 DNNQYVLKEPGYTVGLSELASSSINFVVRPWVKTADYWTARFEILEQIKNALDAADIEIP 260

Query: 257 FPQMDIHV 264
           FPQMDIHV
Sbjct: 261 FPQMDIHV 268