Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., NADH-quinone oxidoreductase, chain I (NCBI) from Rhodospirillum rubrum S1H

 Score = 52.8 bits (125), Expect = 4e-12
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 131 EESCIKCGICERFCPTSAITVE---------KRNSIDINLNLCMGCTACEKVCPKSAIKV 181
           EE CI C +CE  CP  AIT+E         +    DI++  C+ C  CE+ CP  AI V
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI-V 118

Query: 182 ENEMGEITAENEISL 196
           E    E  AE    L
Sbjct: 119 EGPNFEFAAETREEL 133



 Score = 46.6 bits (109), Expect = 3e-10
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 199 DTCINCMVCSEICPVGAIVYE-----DGLMK-----LDDKMCIFCGKCEKNCPVTAI 245
           + CI C +C  ICP  AI  E     DG  +     +D   CI+CG CE+ CPV AI
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 45.1 bits (105), Expect = 9e-10
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 77  EKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIK 136
           E+C+ C++C   CP  AI + E   + +                  R  ++++D   CI 
Sbjct: 61  ERCIACKLCEAICPAQAITI-EAEPRTDGSR---------------RTTRYDIDMTKCIY 104

Query: 137 CGICERFCPTSAI 149
           CG CE  CP  AI
Sbjct: 105 CGFCEEACPVDAI 117



 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 164 CMGCTACEKVCPKSAIKVENEM----GEITAENEISLNNDTCINCMVCSEICPVGAIV 217
           C+ C  CE +CP  AI +E E        T   +I +    CI C  C E CPV AIV
Sbjct: 63  CIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTK--CIYCGFCEEACPVDAIV 118



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 47  KCIRCELCYEMCPVDAI---KEPSVKSPA-----EILPEKCVKCEICAKTCPVGAI 94
           +CI C+LC  +CP  AI    EP           +I   KC+ C  C + CPV AI
Sbjct: 62  RCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 34.7 bits (78), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 43  VESNKCIRCELCYEMCPVDAIKE-PSVKSPAEILPE 77
           ++  KCI C  C E CPVDAI E P+ +  AE   E
Sbjct: 97  IDMTKCIYCGFCEEACPVDAIVEGPNFEFAAETREE 132



 Score = 26.2 bits (56), Expect = 4e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 227 DKMCIFCGKCEKNCPVTAIAIK 248
           ++ CI C  CE  CP  AI I+
Sbjct: 60  EERCIACKLCEAICPAQAITIE 81