Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 48.1 bits (113), Expect = 1e-10
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 126 KHELDEESCIKCGICERFCPTSAITVEKRNS---IDINLNLCMGCTACEKVCPKSAIKVE 182
           K   DE +C+ C +CE  CP  AI  E+R       I  N C+ C  C   C   AIK+ 
Sbjct: 34  KVTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLS 93

Query: 183 NE--MGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKL 225
           N+  +  + A+ +  L +   +    CS  C    +   D LM+L
Sbjct: 94  NDWHLSHLQAD-KYRLTDQALVAYAACSG-CGTKMLPTADALMRL 136



 Score = 45.4 bits (106), Expect = 7e-10
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 154 RNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPV 213
           R  +  +   C+GC  CE VCP  AI+ E     +       + ++TC+NC +CS  C  
Sbjct: 32  RGKVTFDETACVGCKMCEHVCPGGAIRFEERPEGL----RFMIWHNTCVNCGLCSHYCLT 87

Query: 214 GAI 216
            AI
Sbjct: 88  KAI 90



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 193 EISLNNDTCINCMVCSEICPVGAIVYED---GL-MKLDDKMCIFCGKCEKNCPVTAIAI 247
           +++ +   C+ C +C  +CP GAI +E+   GL   +    C+ CG C   C   AI +
Sbjct: 34  KVTFDETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKL 92



 Score = 35.0 bits (79), Expect = 9e-07
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 22/71 (30%)

Query: 79  CVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCG 138
           CV C++C   CP GAI   E    L                      +  +   +C+ CG
Sbjct: 42  CVGCKMCEHVCPGGAIRFEERPEGL----------------------RFMIWHNTCVNCG 79

Query: 139 ICERFCPTSAI 149
           +C  +C T AI
Sbjct: 80  LCSHYCLTKAI 90



 Score = 32.0 bits (71), Expect = 8e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 44 ESNKCIRCELCYEMCPVDAIK--EPSVKSPAEILPEKCVKCEICAKTCPVGAINV 96
          +   C+ C++C  +CP  AI+  E        I    CV C +C+  C   AI +
Sbjct: 38 DETACVGCKMCEHVCPGGAIRFEERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKL 92



 Score = 26.9 bits (58), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 221 GLMKLDDKMCIFCGKCEKNCPVTAIAIKQK 250
           G +  D+  C+ C  CE  CP  AI  +++
Sbjct: 33  GKVTFDETACVGCKMCEHVCPGGAIRFEER 62