Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 176 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 13/147 (8%)

Query: 76  PEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCI 135
           P+KC+ C  C   C V   N   G   + E++    L+ I        +  H  D+  C+
Sbjct: 9   PKKCIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHCDDAPCL 68

Query: 136 KCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITAENEIS 195
                   CP  AI V   +S+ +N   CMGC  C   CP  A++V          +   
Sbjct: 69  NA------CPNGAI-VYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRR 121

Query: 196 LNNDTCINCM------VCSEICPVGAI 216
           +    C  C+       C + CP  ++
Sbjct: 122 VEAHKCDLCIERAAGPACIDACPTKSL 148



 Score = 42.0 bits (97), Expect = 8e-09
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 164 CMGCTACEKVCPKSAIKVENEMGEITAENEISLNN----------DTCINCMVCSEI--- 210
           C+GC  CE  C    +   N  G   + +E S +            T I C  C +    
Sbjct: 12  CIGCRTCEVAC---VVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHCDDAPCL 68

Query: 211 --CPVGAIVYEDGLMKLDDKMCIFCGKCEKNCPVTAIAI 247
             CP GAIVY    ++++   C+ C  C   CP  A+ +
Sbjct: 69  NACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQV 107



 Score = 25.8 bits (55), Expect = 6e-04
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 13/84 (15%)

Query: 34  IVPVERNLYVESNKCIRCELCYEMCPVDA---IKEPSVKSPAEILPEKCVKCEICAK--- 87
           IV    ++ V   +C+ C+ C   CP  A   +K  +  +  +    +  KC++C +   
Sbjct: 76  IVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRRVEAHKCDLCIERAA 135

Query: 88  ------TCPVGAINVLEGRAKLEE 105
                  CP  ++++++ R +++E
Sbjct: 136 GPACIDACPTKSLHLVD-RERVQE 158



 Score = 22.3 bits (46), Expect = 0.007
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 226 DDKMCIFCGKCEKNCPV 242
           D K CI C  CE  C V
Sbjct: 8   DPKKCIGCRTCEVACVV 24