Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 175 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.1 bits (118), Expect = 3e-11
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 17/85 (20%)

Query: 164 CMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGL- 222
           C+GC AC +VCP   I+V +     T E    LN   C  C  C EICP GA+   +   
Sbjct: 43  CIGCGACAEVCPPRLIEVNDAASTRTVE----LNYSRCTYCARCQEICPTGAMTCTEDFE 98

Query: 223 ------------MKLDDKMCIFCGK 235
                       ++LD   C  CGK
Sbjct: 99  MATADRKNLTVSVQLDMVHCETCGK 123



 Score = 48.1 bits (113), Expect = 1e-10
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 129 LDEESCIKCGICERFCPTSAITVEKRNS---IDINLNLCMGCTACEKVCPKSAIKVENEM 185
           +D   CI CG C   CP   I V    S   +++N + C  C  C+++CP  A+    + 
Sbjct: 38  IDGAKCIGCGACAEVCPPRLIEVNDAASTRTVELNYSRCTYCARCQEICPTGAMTCTEDF 97

Query: 186 GEITAENE---ISLNNDTCINCMVCSE 209
              TA+ +   +S+  D  ++C  C +
Sbjct: 98  EMATADRKNLTVSVQLD-MVHCETCGK 123



 Score = 43.5 bits (101), Expect = 3e-09
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 15/98 (15%)

Query: 43  VESNKCIRCELCYEMCPVDAIKEPSVKS--PAEILPEKCVKCEICAKTCPVGAINVLEGR 100
           ++  KCI C  C E+CP   I+     S    E+   +C  C  C + CP GA+   E  
Sbjct: 38  IDGAKCIGCGACAEVCPPRLIEVNDAASTRTVELNYSRCTYCARCQEICPTGAMTCTED- 96

Query: 101 AKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCG 138
                    +E+   D   RK   V  +LD   C  CG
Sbjct: 97  ---------FEMATAD---RKNLTVSVQLDMVHCETCG 122



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 195 SLNNDTCINCMVCSEICPVGAIVYEDG----LMKLDDKMCIFCGKCEKNCPVTAI 245
           +++   CI C  C+E+CP   I   D      ++L+   C +C +C++ CP  A+
Sbjct: 37  TIDGAKCIGCGACAEVCPPRLIEVNDAASTRTVELNYSRCTYCARCQEICPTGAM 91



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 33/132 (25%)

Query: 50  RCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVV 109
           R  L Y   P+ A   P  +    I   KC+ C  CA+ CP   I V +  +        
Sbjct: 16  RVTLPYPFVPLKA--PPRFRGRPTIDGAKCIGCGACAEVCPPRLIEVNDAAST------- 66

Query: 110 YELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEK--------RNSIDINL 161
                        R V  EL+   C  C  C+  CPT A+T  +        R ++ +++
Sbjct: 67  -------------RTV--ELNYSRCTYCARCQEICPTGAMTCTEDFEMATADRKNLTVSV 111

Query: 162 NLCM-GCTACEK 172
            L M  C  C K
Sbjct: 112 QLDMVHCETCGK 123



 Score = 25.4 bits (54), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 221 GLMKLDDKMCIFCGKCEKNCPVTAIAI 247
           G   +D   CI CG C + CP   I +
Sbjct: 34  GRPTIDGAKCIGCGACAEVCPPRLIEV 60



 Score = 24.6 bits (52), Expect = 0.001
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 39 RNLYVESNKCIRCELCYEMCPVDAI 63
          R + +  ++C  C  C E+CP  A+
Sbjct: 67 RTVELNYSRCTYCARCQEICPTGAM 91