Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 243 a.a., quinol dehydrogenase periplasmic component (RefSeq) from Shewanella loihica PV-4

 Score = 60.8 bits (146), Expect = 2e-14
 Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 45/162 (27%)

Query: 48  CIRCELCYEMCPVDAIK----EPSVKSPAEILPEKCVKCEI-----CAKTCPVGAINVLE 98
           C+RC LC + CP D +K         +       + V CE+     C K CP G+++   
Sbjct: 66  CVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVPCEMCEDIPCVKACPSGSLD--- 122

Query: 99  GRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESC-----IKCGICERFCP--TSAITV 151
                      + L  ID     I ++   +DE++C     ++C +C R CP   +AIT+
Sbjct: 123 -----------HALTNIDEAKMGIAVL---IDEKNCLNFKGLRCDVCYRICPLIDNAITL 168

Query: 152 EKRNS----------IDINLNLCMGCTACEKVC--PKSAIKV 181
           E++++            +N + C GC  CE  C   ++AIKV
Sbjct: 169 ERQHNQRSDHHAMFLPTVNSDTCTGCGKCEHACVLEEAAIKV 210



 Score = 46.2 bits (108), Expect = 6e-10
 Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 33/153 (21%)

Query: 129 LDEE----SCIKCGICERFCPTSAITVEK-----RNSIDINLNLCMGCTACE-----KVC 174
           LDE+    +C++CG+C + CP   + + +                + C  CE     K C
Sbjct: 57  LDEQDFLSACVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVPCEMCEDIPCVKAC 116

Query: 175 PKSAIK------VENEMGEITAENEISLNNDTCINCMVCSEICPV--GAIVYEDG----- 221
           P  ++        E +MG     +E +  N   + C VC  ICP+   AI  E       
Sbjct: 117 PSGSLDHALTNIDEAKMGIAVLIDEKNCLNFKGLRCDVCYRICPLIDNAITLERQHNQRS 176

Query: 222 ------LMKLDDKMCIFCGKCEKNCPVTAIAIK 248
                 L  ++   C  CGKCE  C +   AIK
Sbjct: 177 DHHAMFLPTVNSDTCTGCGKCEHACVLEEAAIK 209



 Score = 27.3 bits (59), Expect = 3e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 47  KCIRCELCYEMCPV--DAI---KEPSVKSP--AEILP----EKCVKCEICAKTCPV--GA 93
           K +RC++CY +CP+  +AI   ++ + +S   A  LP    + C  C  C   C +   A
Sbjct: 148 KGLRCDVCYRICPLIDNAITLERQHNQRSDHHAMFLPTVNSDTCTGCGKCEHACVLEEAA 207

Query: 94  INVLEGRAKL 103
           I VL     L
Sbjct: 208 IKVLPAHIAL 217