Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 656 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 67.8 bits (164), Expect = 5e-16
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 22/139 (15%)

Query: 134 CIKCGICERFCPTSAITVEKRNSIDINL---------NLC-MGCTACEKVCPKSAIKVEN 183
           C++CG+C   CPT+ +      S  + +           C   C AC + CP +AI+   
Sbjct: 423 CVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIRRLA 482

Query: 184 EMGEITAENEISLNNDTCI------NCMVCSEICPVGAIV------YEDGLMKLDDKMCI 231
           +           +  D C+       C+VC E+CP  AI       Y  G+  +D   C 
Sbjct: 483 DERTFAKIGTAEVLRDHCLAWAKKKRCLVCDEVCPYDAIALKPEPGYTVGVPHVDPARCA 542

Query: 232 FCGKCEKNCPVTAIAIKQK 250
            CG CEK+CP T  A  QK
Sbjct: 543 GCGFCEKHCPETVQATGQK 561



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 26/145 (17%)

Query: 47  KCIRCELCYEMCPVDAIKEPSVKSPA------EILPEK--C-VKCEICAKTCPVGAINVL 97
           +C+RC LC   CP + ++   + S A       + P +  C   C  CA+ CP  AI   
Sbjct: 422 RCVRCGLCAAACPTNTLQPAWLASGALGMFSPVVTPARGFCDPACHACARACPTTAIR-- 479

Query: 98  EGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSI 157
               +L ++    ++   +V      L  H L      +C +C+  CP  AI ++     
Sbjct: 480 ----RLADERTFAKIGTAEV------LRDHCLAWAKKKRCLVCDEVCPYDAIALKPEPGY 529

Query: 158 DINL-----NLCMGCTACEKVCPKS 177
            + +       C GC  CEK CP++
Sbjct: 530 TVGVPHVDPARCAGCGFCEKHCPET 554



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 28/96 (29%), Positives = 33/96 (34%), Gaps = 24/96 (25%)

Query: 85  CAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFC 144
           C   CP GA   L GRA      V                      E +C  CG C R C
Sbjct: 227 CRMLCPAGAAMGLAGRAAPWRRRV----------------------EHACTACGACARRC 264

Query: 145 PTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIK 180
           P  AI      + D     C+ C  C  VCP  A++
Sbjct: 265 PAGAIPAAAPRATD--HAECLKCLRCADVCPVDAVR 298



 Score = 38.1 bits (87), Expect = 5e-07
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 18/83 (21%)

Query: 140 CERFCPTSAI------TVEKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITAENE 193
           C   CP  A           R  ++   + C  C AC + CP  AI          AE  
Sbjct: 227 CRMLCPAGAAMGLAGRAAPWRRRVE---HACTACGACARRCPAGAIPAAAPRATDHAE-- 281

Query: 194 ISLNNDTCINCMVCSEICPVGAI 216
                  C+ C+ C+++CPV A+
Sbjct: 282 -------CLKCLRCADVCPVDAV 297



 Score = 35.8 bits (81), Expect = 2e-06
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 48  CIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAI 94
           C  C  C   CP  AI      +P      +C+KC  CA  CPV A+
Sbjct: 254 CTACGACARRCPAGAIP---AAAPRATDHAECLKCLRCADVCPVDAV 297



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 35  VPVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPE 77
           +P       +  +C++C  C ++CPVDA++      P  ++PE
Sbjct: 269 IPAAAPRATDHAECLKCLRCADVCPVDAVRFAFSDVPGVVMPE 311



 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 29/98 (29%)

Query: 54  CYEMCPVDAIKEPSVKSPA--EILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYE 111
           C  +CP  A    + ++      +   C  C  CA+ CP GAI     RA          
Sbjct: 227 CRMLCPAGAAMGLAGRAAPWRRRVEHACTACGACARRCPAGAIPAAAPRA---------- 276

Query: 112 LKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAI 149
                             D   C+KC  C   CP  A+
Sbjct: 277 -----------------TDHAECLKCLRCADVCPVDAV 297



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 207 CSEICPVGAIVYEDGLM----KLDDKMCIFCGKCEKNCPVTAI 245
           C  +CP GA +   G      +  +  C  CG C + CP  AI
Sbjct: 227 CRMLCPAGAAMGLAGRAAPWRRRVEHACTACGACARRCPAGAI 269