Pairwise Alignments
Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 113 bits (282), Expect = 6e-30
Identities = 74/245 (30%), Positives = 107/245 (43%), Gaps = 59/245 (24%)
Query: 45 SNKCIRCELCYEMCPVDAIK-------------EPSVKSPAEILPEKCVKCEICAKTCPV 91
S KC+ C +C CP DA+K P +K E+ KCV CE C CP
Sbjct: 68 SEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQ 127
Query: 92 GAINVLEGRAKLEEDNVVYELKEIDVTHRK-IRLVKHELDEESCIKCGICERFCPTSAIT 150
AI+V E +V RK + L + + ++ C+ CGIC +CP AI
Sbjct: 128 CAIDV-----------------EREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIE 170
Query: 151 VEKRN----------SIDINLNLCMGCTACEKVCPKSA-------------IKVENEMGE 187
+ + I I+L+ C+ C CEK CP +A IK GE
Sbjct: 171 LIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGE 230
Query: 188 ITAENEISLNNDTCINCMVCSEICPVGAIVYE---DGLMKLDDKMCIFCGKCEKNCPVTA 244
I + + +++ D C++C C+ ICP AI E +G + +D+ C CG C CP A
Sbjct: 231 I--KGQTNIDKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNA 288
Query: 245 IAIKQ 249
+ Q
Sbjct: 289 LVFPQ 293
Score = 110 bits (274), Expect = 5e-29
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 54/247 (21%)
Query: 37 VERNLYVESNKCIRCELCYEMCPVDAI--------KEPSVKSPAEILPEKCVKCEICAKT 88
++R + + +KC+ CE C +CP AI ++ V I + CV C ICA+
Sbjct: 104 IKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEY 163
Query: 89 CPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSA 148
CP AI ++ N + ++K +D ++C+ C +CE+ CP +A
Sbjct: 164 CPADAIELIPNDMNALSLNPIADIK---------------IDLDACVYCKVCEKACPHNA 208
Query: 149 ITV------------------EKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITA 190
I E + +I+ +LC+ C C +CP AI+VE
Sbjct: 209 IEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPF----- 263
Query: 191 ENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKLD--------DKMCIFCGKCEKNCPV 242
E E+ ++ C C C +CP A+V+ + D +CI CG C +CPV
Sbjct: 264 EGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPV 323
Query: 243 TAIAIKQ 249
A+ +K+
Sbjct: 324 DALTVKR 330
Score = 104 bits (260), Expect = 2e-27
Identities = 67/241 (27%), Positives = 106/241 (43%), Gaps = 50/241 (20%)
Query: 48 CIRCELCYEMCPVDAIK--------EPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEG 99
C+ C +C E+CP AI+ + + +P + EKCV C +CA CP A+ +
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKL--- 88
Query: 100 RAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKR----- 154
D + E+ + R I EL++ C+ C CE CP AI VE+
Sbjct: 89 ---SINDKPITEMPQYPKIKRGI-----ELNQSKCVLCEQCELVCPQCAIDVEREVPERK 140
Query: 155 ----NSIDINLNLCMGCTACEKVCPKSAIK-VENEMGEITAE--NEISLNNDTCINCMVC 207
I I + C+ C C + CP AI+ + N+M ++ +I ++ D C+ C VC
Sbjct: 141 SLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVC 200
Query: 208 SEICP---VGAIVYE----------------DGLMKLDDKMCIFCGKCEKNCPVTAIAIK 248
+ CP + AI Y+ G +D +C+ CG C CP AI ++
Sbjct: 201 EKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVE 260
Query: 249 Q 249
+
Sbjct: 261 K 261
Score = 76.3 bits (186), Expect = 8e-19
Identities = 56/210 (26%), Positives = 81/210 (38%), Gaps = 71/210 (33%)
Query: 102 KLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSI---- 157
K +E++ V E+ V R ++ D+ +C+ CGIC CPTSAI + +I
Sbjct: 5 KKDENDGVIEISRSGVEKRVLKW-----DDCTCVGCGICSEICPTSAIEMGPLGAIFKGD 59
Query: 158 -------------------------------------------------DINLNLCMGCT 168
++N + C+ C
Sbjct: 60 IDAPKLDISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCE 119
Query: 169 ACEKVCPKSAIKVENEMGE--ITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLM--- 223
CE VCP+ AI VE E+ E EI++ D C+ C +C+E CP AI M
Sbjct: 120 QCELVCPQCAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNAL 179
Query: 224 --------KLDDKMCIFCGKCEKNCPVTAI 245
K+D C++C CEK CP AI
Sbjct: 180 SLNPIADIKIDLDACVYCKVCEKACPHNAI 209
Score = 65.5 bits (158), Expect = 1e-15
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 63/202 (31%)
Query: 43 VESNKCIRCELCYEMCPVDAIKE-PSVKSPAEILP--------EKCVKCEICAKTCPVGA 93
++ + C+ C +C E CP DAI+ P+ + + P + CV C++C K CP A
Sbjct: 149 IKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNA 208
Query: 94 INVLEGR----AKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAI 149
I + + +K+++ + E+K + +D++ C+ CG C CP AI
Sbjct: 209 IEAICYKCPLASKIKKPELYGEIKG-----------QTNIDKDLCVSCGWCANICPADAI 257
Query: 150 TVEKR---------------------------------------NSIDINLNLCMGCTAC 170
VEK ++ +N ++C+ C AC
Sbjct: 258 EVEKPFEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGAC 317
Query: 171 EKVCPKSAIKVENEMGEITAEN 192
CP A+ V+ +T N
Sbjct: 318 THSCPVDALTVKRTKINMTEAN 339
Score = 50.8 bits (120), Expect = 4e-11
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 27 KEKLKDLIVPVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAE---ILPE-KCVKC 82
K K +L ++ ++ + C+ C C +CP DAI+ V+ P E I+ E C C
Sbjct: 221 KIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIE---VEKPFEGELIIDEPACNAC 277
Query: 83 EICAKTCPVGAINVLEGRAKLEE-DNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICE 141
C CP A+ + + ++ NVV ++++ CI CG C
Sbjct: 278 GACISVCPCNALVFPQPEKQGDKVPNVV-------------------VNQDVCILCGACT 318
Query: 142 RFCPTSAITVEKRNSIDI 159
CP A+TV KR I++
Sbjct: 319 HSCPVDALTV-KRTKINM 335
Score = 45.8 bits (107), Expect = 1e-09
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 36 PVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILP------EKCVKCEICAKTC 89
P E L ++ C C C +CP +A+ P + + +P + C+ C C +C
Sbjct: 262 PFEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSC 321
Query: 90 PVGAINVLEGRAKLEEDN 107
PV A+ V + + E N
Sbjct: 322 PVDALTVKRTKINMTEAN 339