Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  105 bits (262), Expect = 1e-27
 Identities = 79/254 (31%), Positives = 116/254 (45%), Gaps = 55/254 (21%)

Query: 31  KDLIVPVERN-----LYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPE----KCVK 81
           K+  +P ER      ++    KCI C  C E CP DAI     +   + +P      C+ 
Sbjct: 27  KESFIPPERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCIN 86

Query: 82  CEICAKTCPVGAINVLE-GRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGIC 140
           C  C ++CP    NVLE G  + E   +++ + +I      I L+   +DEE C+ CG C
Sbjct: 87  CGNCVESCPT---NVLEMGTLRKEAKELLWNVPKI------INLL---IDEEICVSCGTC 134

Query: 141 ERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCP-KSAIKVENEMGEITAENEISLNN- 198
           E  CP  AI+       +I++N+C+ C  C KVCP ++AI   +E G ++ + EI+ N  
Sbjct: 135 ENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVENAIVTYDEPG-LSEKIEIAQNTK 193

Query: 199 -------------------------DTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFC 233
                                      CI C  C ++CP G+I     L +L    CI  
Sbjct: 194 FDRERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCP-GSI----DLERLKVTSCIKS 248

Query: 234 GKCEKNCPVTAIAI 247
           GKC + CP TAI I
Sbjct: 249 GKCLEVCPTTAIRI 262



 Score = 94.0 bits (232), Expect = 4e-24
 Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 23/235 (9%)

Query: 26  VKEKLKDLI--VPVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCE 83
           ++++ K+L+  VP   NL ++   C+ C  C   CPVDAI   +     EI    CV C+
Sbjct: 104 LRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISHNNT-GLYEIDVNICVSCK 162

Query: 84  ICAKTCPVGAINVLEGRAKLEE-----DNVVYELKEIDVTHRKIRLVKHELDE---ESCI 135
            C K CPV    V      L E      N  ++ + +    ++   V  E+       CI
Sbjct: 163 NCLKVCPVENAIVTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCI 222

Query: 136 KCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIK--VENEMGEITAENE 193
            CG C   CP S I +E+     + +  C+    C +VCP +AI+  V  ++ + TAE  
Sbjct: 223 GCGNCVDVCPGS-IDLER-----LKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECY 276

Query: 194 ISLNNDTCINCMVCSEICPVGAIVY---EDGLMKLDDKMCIFCGKCEKNCPVTAI 245
           I ++ + CI C +C   C V   +    E  L  ++ + C+ CG C+  CPV AI
Sbjct: 277 I-VDEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 52.8 bits (125), Expect = 1e-11
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 19  LGIDEKFVKEKLKDLIVPVERNLYVESNKCIRCELCYEMCPV-DAIKEPSVKSPAEILPE 77
           +G+ EK  K   +  IV  E        KCI C +CY  C V +AI      +   I PE
Sbjct: 262 IGVPEKITKRTAECYIVDEE--------KCIGCRICYRACNVPEAILISKETNLPYINPE 313

Query: 78  KCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEI 115
            CV+C +C   CPV AI+ L    K E    +Y  ++I
Sbjct: 314 YCVRCGLCQNACPVDAIDYL----KTETSEDLYSKRKI 347



 Score = 37.4 bits (85), Expect = 5e-07
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 33  LIVPVERNL-YVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCE 83
           +++  E NL Y+    C+RC LC   CPVDAI     ++  ++  ++ ++ E
Sbjct: 299 ILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKTETSEDLYSKRKIRDE 350



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 230 CIFCGKCEKNCPVTAIAIK 248
           CI C  C+++CP  AI+++
Sbjct: 49  CISCSACKESCPSDAISME 67