Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  100 bits (250), Expect = 1e-26
 Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 22/179 (12%)

Query: 4   VKKPVQKIISDISKNLGIDEKFVKEKLKDLIVPVERNLYVESNKCIRCELCYEMCPVDAI 63
           V K ++K   ++     +D +++  K++           +    CI C  C E+CPV AI
Sbjct: 5   VSKILKKYFDNLDIKFELDSQYISNKIE-----------INPELCILCNRCLEVCPVTAI 53

Query: 64  KEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIR 123
                + P   +  KCV C  C +TCPV AI + + R ++E+ N++ E         +++
Sbjct: 54  SSNFPEVPD--IDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIE--------NRLK 103

Query: 124 LVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVE 182
             K + + + C+ C +C + CP  AI+ E  ++I  +++ C+ C  CE++CP  AIK+E
Sbjct: 104 SKKLDYNRKKCVMCLVCTKNCPFGAIS-ESDDNISFDMDKCVLCGHCEEICPAKAIKLE 161



 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 11/133 (8%)

Query: 126 KHELDEESCIKCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVEN-- 183
           K E++ E CI C  C   CP +AI+       DI+ N C+ C  C + CP  AIK+    
Sbjct: 30  KIEINPELCILCNRCLEVCPVTAISSNFPEVPDID-NKCVYCNTCVETCPVDAIKITKTR 88

Query: 184 ---EMGEITAEN-----EISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGK 235
              E G +  EN     ++  N   C+ C+VC++ CP GAI   D  +  D   C+ CG 
Sbjct: 89  VRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAISESDDNISFDMDKCVLCGH 148

Query: 236 CEKNCPVTAIAIK 248
           CE+ CP  AI ++
Sbjct: 149 CEEICPAKAIKLE 161



 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 26/116 (22%)

Query: 155 NSIDINLNLCMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVG 214
           N I+IN  LC+ C  C +VCP +AI             E+   ++ C+ C  C E CPV 
Sbjct: 29  NKIEINPELCILCNRCLEVCPVTAISSNFP--------EVPDIDNKCVYCNTCVETCPVD 80

Query: 215 AI--------------VYEDGLM--KLD--DKMCIFCGKCEKNCPVTAIAIKQKNM 252
           AI              + E+ L   KLD   K C+ C  C KNCP  AI+    N+
Sbjct: 81  AIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAISESDDNI 136



 Score = 51.6 bits (122), Expect = 9e-12
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 179 IKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCEK 238
           + ++ E+      N+I +N + CI C  C E+CPV AI      +   D  C++C  C +
Sbjct: 16  LDIKFELDSQYISNKIEINPELCILCNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVE 75

Query: 239 NCPVTAIAI 247
            CPV AI I
Sbjct: 76  TCPVDAIKI 84