Pairwise Alignments
Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 108 bits (269), Expect = 3e-28
Identities = 77/260 (29%), Positives = 118/260 (45%), Gaps = 35/260 (13%)
Query: 3 TVKKPVQKIISDISKNLGIDEKFVKEKLKDLIVPVER----NLYVESNKCIRCELCYEMC 58
T K + + S I K +G +F ++K ++ P ER ++ ++S KC+ C C +C
Sbjct: 132 TKNKMLMERYSTIFKMMGKTYEFPEQKHVKIVKPTERMLRHSISIDSEKCVECGKCIYVC 191
Query: 59 PVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAIN--------VLEGRAKLEEDNVVY 110
P D I E AEI+ + C +C IC + CPV AI +L G +
Sbjct: 192 PKDTIIE------AEIV-DGCTRCNICNEVCPVDAIKYGEVTENCILCGNCISKCPKDAL 244
Query: 111 ELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLNLCMGCTAC 170
E+ E V K + + E+ CI CG+C CP++A+ E I + C C C
Sbjct: 245 EISEFKVVKTKEDVKAN--PEKHCINCGLCVDKCPSNALRFE-NGKILYDPKTCTLCNTC 301
Query: 171 EKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYED--GLMKLDDK 228
K CP+ +++ N+ + C+ C VC + CP AI ++ +D K
Sbjct: 302 VKECPQ-GVRI----------NKGGFVDGGCVLCEVCIKECPEDAISIKERSKFTSIDKK 350
Query: 229 MCIFCGKCEKNCPVTAIAIK 248
CI CG C CP AI +K
Sbjct: 351 ECIACGTCSMVCPNDAITVK 370
Score = 95.1 bits (235), Expect = 2e-24
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 50/244 (20%)
Query: 42 YVESNKCIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGA-------- 93
YV C C +C CP+D I + CV C +C CP A
Sbjct: 69 YVNRKLCTGCGICKNACPIDIIDIREDSTGKAYPTGMCVMCGLCTTECPYNARLYFDPSS 128
Query: 94 INVLEGRAKLEEDNVVYEL----------KEIDVTHRKIRLVKHEL--DEESCIKCGICE 141
+ + + +E + ++++ K + + R+++H + D E C++CG C
Sbjct: 129 LKNTKNKMLMERYSTIFKMMGKTYEFPEQKHVKIVKPTERMLRHSISIDSEKCVECGKCI 188
Query: 142 RFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIK----VEN-------------- 183
CP T+ + +D C C C +VCP AIK EN
Sbjct: 189 YVCPKD--TIIEAEIVDG----CTRCNICNEVCPVDAIKYGEVTENCILCGNCISKCPKD 242
Query: 184 -----EMGEITAENEISLNNDT-CINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCE 237
E + + ++ N + CINC +C + CP A+ +E+G + D K C C C
Sbjct: 243 ALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCV 302
Query: 238 KNCP 241
K CP
Sbjct: 303 KECP 306
Score = 79.3 bits (194), Expect = 1e-19
Identities = 68/261 (26%), Positives = 95/261 (36%), Gaps = 77/261 (29%)
Query: 42 YVESNKCIRCEL--CYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLE- 98
Y E C E+ C E+CP +AIK K+ + C+ C CAK CP GAI E
Sbjct: 12 YEECENCKSKEISKCMEVCPTNAIKMIDGKAFS------CITCGTCAKECPTGAIKKNEY 65
Query: 99 -----GRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSA----- 148
R + ID+ + C+ CG+C CP +A
Sbjct: 66 GGYYVNRKLCTGCGICKNACPIDIIDIREDSTGKAYPTGMCVMCGLCTTECPYNARLYFD 125
Query: 149 ----------ITVEK------------------------------RNSIDINLNLCMGCT 168
+ +E+ R+SI I+ C+ C
Sbjct: 126 PSSLKNTKNKMLMERYSTIFKMMGKTYEFPEQKHVKIVKPTERMLRHSISIDSEKCVECG 185
Query: 169 ACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDK 228
C VCPK I +E E+ D C C +C+E+CPV AI Y + +
Sbjct: 186 KCIYVCPKDTI-IEAEI------------VDGCTRCNICNEVCPVDAIKYGE-----VTE 227
Query: 229 MCIFCGKCEKNCPVTAIAIKQ 249
CI CG C CP A+ I +
Sbjct: 228 NCILCGNCISKCPKDALEISE 248
Score = 73.9 bits (180), Expect = 6e-18
Identities = 54/177 (30%), Positives = 77/177 (43%), Gaps = 31/177 (17%)
Query: 23 EKFVKEKLKDLIVPVERNLY--VESNKCIRCELCYEMCPVDAI--KEPSVKSPAE----- 73
E +KE +D I ER+ + ++ +CI C C +CP DAI K S+
Sbjct: 325 EVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSE 384
Query: 74 -ILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEE 132
I + CV CE CA CP I G K+ +D + IR+ D+
Sbjct: 385 VIFNDNCVLCEKCAIHCPRDVIENTSGYKKV-----------VDPENSYIRV-----DDG 428
Query: 133 SCIKCGICERFCPTSAITVEKRNSIDINLNLCMGCTACEKVCPKSAIKVENEMGEIT 189
C+KCG+C CP AI + +I C C+AC +CP AI++ E T
Sbjct: 429 YCVKCGLCTIICPNDAI-----DKGEITTERCEYCSACVNICPTRAIRIYRTWNEKT 480
Score = 73.2 bits (178), Expect = 9e-18
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 37/178 (20%)
Query: 48 CIRCELCYEMCPVDAIKEPSVKSPAEILPEKCVKCEICAKTCPVGAINVLEGRAKLEEDN 107
C+ CE+C + CP DAI I ++C+ C C+ CP AI V
Sbjct: 321 CVLCEVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAITV----------- 369
Query: 108 VVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAI--------TVEKRNS-ID 158
++ ++ + K+ + ++C+ C C CP I V+ NS I
Sbjct: 370 ---KIDSLNFSGNKVH--SEVIFNDNCVLCEKCAIHCPRDVIENTSGYKKVVDPENSYIR 424
Query: 159 INLNLCMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAI 216
++ C+ C C +CP AI + GEIT E C C C ICP AI
Sbjct: 425 VDDGYCVKCGLCTIICPNDAI----DKGEITTER--------CEYCSACVNICPTRAI 470