Pairwise Alignments

Query, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 244 a.a., quinol dehydrogenase periplasmic component (RefSeq) from Shewanella sp. ANA-3

 Score = 56.6 bits (135), Expect = 5e-13
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 45/162 (27%)

Query: 48  CIRCELCYEMCPVDAIK----EPSVKSPAEILPEKCVKCEI-----CAKTCPVGAINVLE 98
           C+RC LC E CP D +          +       + + CE+     C K CP GA++   
Sbjct: 67  CVRCGLCVEACPYDTLSLARWFDGAATGTPFFTARRIPCEMCEDIPCIKACPSGALDP-- 124

Query: 99  GRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESC-----IKCGICERFCP--TSAITV 151
                       +L++I      + ++   +DE++C     ++C +C R CP   +AIT+
Sbjct: 125 ------------QLEQISDAKMGVAVL---IDEKNCLNFKGLRCDVCYRVCPLIDNAITL 169

Query: 152 EKRNS----------IDINLNLCMGCTACEKVC--PKSAIKV 181
           E++ +            +N + C GC  CE  C    +AIKV
Sbjct: 170 ERQRNQHSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAAIKV 211



 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 37/145 (25%), Positives = 56/145 (38%), Gaps = 29/145 (20%)

Query: 133 SCIKCGICERFCPTSAITVEK-----RNSIDINLNLCMGCTACE-----KVCPKSAIKVE 182
           +C++CG+C   CP   +++ +                + C  CE     K CP  A+  +
Sbjct: 66  ACVRCGLCVEACPYDTLSLARWFDGAATGTPFFTARRIPCEMCEDIPCIKACPSGALDPQ 125

Query: 183 NE------MGEITAENEISLNNDTCINCMVCSEICPV--GAIVYEDG-----------LM 223
            E      MG     +E +  N   + C VC  +CP+   AI  E             L 
Sbjct: 126 LEQISDAKMGVAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQHSDHHAMFLP 185

Query: 224 KLDDKMCIFCGKCEKNCPVTAIAIK 248
            ++   C  CGKCE  C +   AIK
Sbjct: 186 TVNSDTCTGCGKCEHACVLDTAAIK 210



 Score = 26.6 bits (57), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 47  KCIRCELCYEMCP-------VDAIKEPSVKSPAEILP----EKCVKCEICAKTC--PVGA 93
           K +RC++CY +CP       ++  +       A  LP    + C  C  C   C     A
Sbjct: 149 KGLRCDVCYRVCPLIDNAITLERQRNQHSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAA 208

Query: 94  INVL 97
           I VL
Sbjct: 209 IKVL 212