Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 165 a.a., ferredoxin-type protein NapF (RefSeq) from Shewanella amazonensis SB2B

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 18/141 (12%)

Query: 26  YISNKIEINPEICILCNRCLEVCPVTAI---SSNFPEVPDIDNKCVYCNTCVETCPVDAI 82
           ++ + +E   ++C  C  C+ VC    I    + FPEV   + +C +C  C + CP    
Sbjct: 25  FVRDDVEFT-DLCSRCGDCITVCETKIIVKGEAGFPEVRFDNAECTFCGECAKVCPEPIF 83

Query: 83  KITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAISESD-----DTIS 137
            + K      +    +E  ++   L +   + + C  C   C   AI  +       T  
Sbjct: 84  SLDK------SPPWTLEASIQESCLAH---RGIWCQSCKDACDVSAIRFTPTLGRAPTPE 134

Query: 138 FNMDKCVLCGHCEEICPAKAI 158
             +D C  CG C   CPA AI
Sbjct: 135 LLLDACTGCGACVAPCPADAI 155



 Score = 34.3 bits (77), Expect = 1e-06
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 39  ILCNRCLEVCPVTAIS-----SNFPEVPDIDNKCVYCNTCVETCPVDAIKITK 86
           I C  C + C V+AI         P    + + C  C  CV  CP DAI + K
Sbjct: 107 IWCQSCKDACDVSAIRFTPTLGRAPTPELLLDACTGCGACVAPCPADAIVMIK 159



 Score = 30.8 bits (68), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 114 CVMCLVCTKNCPFEAISESD---DTISFNMDKCVLCGHCEEICPAKAIKLE 161
           C  C  C   C  + I + +     + F+  +C  CG C ++CP     L+
Sbjct: 36  CSRCGDCITVCETKIIVKGEAGFPEVRFDNAECTFCGECAKVCPEPIFSLD 86