Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., NADH-quinone oxidoreductase, chain I (NCBI) from Rhodospirillum rubrum S1H

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 28/115 (24%)

Query: 18  INFELDSQYISNKIE---------INPEICILCNRCLEVCPVTAIS---------SNFPE 59
           IN+  +  Y+S +              E CI C  C  +CP  AI+         S    
Sbjct: 34  INYPFEKGYLSPRFRGEHALRRYANGEERCIACKLCEAICPAQAITIEAEPRTDGSRRTT 93

Query: 60  VPDID-NKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKK 113
             DID  KC+YC  C E CPVDAI      V   N     E R   ++L YN+ K
Sbjct: 94  RYDIDMTKCIYCGFCEEACPVDAI------VEGPNFEFAAETR---EELLYNKAK 139



 Score = 44.7 bits (104), Expect = 7e-10
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 112 KKCVMCLVCTKNCPFEAI----------SESDDTISFNMDKCVLCGHCEEICPAKAI 158
           ++C+ C +C   CP +AI          S        +M KC+ CG CEE CP  AI
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 40.0 bits (92), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 64  DNKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKN 123
           + +C+ C  C   CP  AI I +   R +          ++ + D +  KC+ C  C + 
Sbjct: 60  EERCIACKLCEAICPAQAITI-EAEPRTDGSR-------RTTRYDIDMTKCIYCGFCEEA 111

Query: 124 CPFEAISE 131
           CP +AI E
Sbjct: 112 CPVDAIVE 119



 Score = 32.0 bits (71), Expect = 5e-06
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 141 DKCVLCGHCEEICPAKAIKLE 161
           ++C+ C  CE ICPA+AI +E
Sbjct: 61  ERCIACKLCEAICPAQAITIE 81