Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  105 bits (262), Expect = 6e-28
 Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 22/179 (12%)

Query: 5   VSKILKKYFDNLDINFELDSQYISNKIE-----------INPEICILCNRCLEVCPVTAI 53
           V K ++K   ++  N  +D +++  K++           +    CI C  C EVCPV AI
Sbjct: 4   VKKPVQKIISDISKNLGIDEKFVKEKLKDLMVPVERNLYVESNKCIRCELCYEVCPVDAI 63

Query: 54  SSNFPEVPD--IDNKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIE--------NRLK 103
                + P   I  KCV C  C +TCPV AI + + R ++E   ++ E         +++
Sbjct: 64  KEPSVKSPAEIIPEKCVKCEICAKTCPVGAINVLEGRAKLEEDTVVYELKEIDVTHRKIR 123

Query: 104 SKKLDYNRKKCVMCLVCTKNCPFEAIS-ESDDTISFNMDKCVLCGHCEEICPAKAIKLE 161
             K + + + C+ C +C + CP  AI+ E  ++I  N+D C+ C  CE++CP  AIK+E
Sbjct: 124 LVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLDLCMGCTACEKVCPKSAIKVE 182



 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 30  KIEINPEICILCNRCLEVCPVTAISSNFPEVPDID-NKCVYCNTCVETCPVDAIKITKTR 88
           K E++ E CI C  C   CP +AI+       DI+ + C+ C  C + CP  AIK+    
Sbjct: 126 KHELDEESCIKCGICERFCPTSAITVEKRNSIDINLDLCMGCTACEKVCPKSAIKVEN-- 183

Query: 89  VRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAISESDDTISFNMDKCVLCGH 148
              E G +  EN     ++  N   C+ C+VC++ CP  AI   D  +  +   C+ CG 
Sbjct: 184 ---EMGEITAEN-----EISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGK 235

Query: 149 CEEICPAKAIKLE 161
           CE+ CP  AI ++
Sbjct: 236 CEKNCPVTAIAIK 248



 Score = 51.2 bits (121), Expect = 1e-11
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query: 16  LDINFELDSQYISNKIEINPEICILCNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVE 75
           + +  E+      N+I +N + CI C  C E+CPV AI      +   D  C++C  C +
Sbjct: 179 IKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCEK 238

Query: 76  TCPVDAIKI 84
            CPV AI I
Sbjct: 239 NCPVTAIAI 247