Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 558 a.a., iron-sulfur cluster-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 50.4 bits (119), Expect = 5e-11
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 100 NRLKSKKLDYNRKKCVMCLVCTKNCPFEAISESDD--TISFNMDKCVLCGHCEEICPAKA 157
           N +   K+  N +KC +C+ C   CP  A+ +  D   + F    CV CG CE  CP K 
Sbjct: 414 NNVPYGKVSVNVEKCTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKV 473

Query: 158 IKL 160
           I L
Sbjct: 474 ISL 476



 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 30  KIEINPEICILCNRCLEVCPVTAI--SSNFPEVPDIDNKCVYCNTCVETCPVDAIKITKT 87
           K+ +N E C LC  C+ +CP  A+    + P +  I+  CV C  C   CP   I +T  
Sbjct: 420 KVSVNVEKCTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCESACPEKVISLT-P 478

Query: 88  RVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAIS---------ESDDTISF 138
           ++  +      ++ LK +       +C+ C       PF   S          +    S 
Sbjct: 479 QINFDKAARQQQHTLKEEA----PFECIRC-----GSPFATQSMVHRMLDMVGAHSAFSA 529

Query: 139 NMDKCVLCGHC 149
           N+++  +CG C
Sbjct: 530 NIERLKMCGDC 540



 Score = 40.8 bits (94), Expect = 4e-08
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 31  IEINPEICIL-------CNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTCVETCPVDAI 82
           ++IN ++C         CNRCL  CP  AISS   ++      C    +C  TCP  AI
Sbjct: 183 VKINADLCAHDRNGINGCNRCLNFCPADAISSVAKKIEVDPYLCHGAGSCASTCPTGAI 241



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 27  ISNKIEINPEICILCNRCLEVCPVTAISSNFP 58
           ++ KIE++P +C     C   CP  AIS + P
Sbjct: 215 VAKKIEVDPYLCHGAGSCASTCPTGAISYDLP 246



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 117 CLVCTKNCPFEAISESDDTISFNMDKCVLCGHCEEICPAKAIKLE 161
           C  C   CP +AIS     I  +   C   G C   CP  AI  +
Sbjct: 200 CNRCLNFCPADAISSVAKKIEVDPYLCHGAGSCASTCPTGAISYD 244



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 18/61 (29%)

Query: 70  CNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAI 129
           CN C+  CP DAI                     +KK++ +   C     C   CP  AI
Sbjct: 200 CNRCLNFCPADAISSV------------------AKKIEVDPYLCHGAGSCASTCPTGAI 241

Query: 130 S 130
           S
Sbjct: 242 S 242