Pairwise Alignments

Query, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 553 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 80  DAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAISESDD--TIS 137
           DAI    ++    N +L I N +   K+  N +KC +C+ C   CP  A+ +  D   + 
Sbjct: 390 DAIDHLNSQAGEINSSLSINN-VPYGKVSVNVEKCTLCMSCVAICPTMALQDGGDKPALH 448

Query: 138 FNMDKCVLCGHCEEICPAKAIKL 160
           F    CV CG CE  CP K I L
Sbjct: 449 FIEQNCVQCGLCEAACPEKVISL 471



 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 30  KIEINPEICILCNRCLEVCPVTAI--SSNFPEVPDIDNKCVYCNTCVETCPVDAIKITKT 87
           K+ +N E C LC  C+ +CP  A+    + P +  I+  CV C  C   CP   I +T  
Sbjct: 415 KVSVNVEKCTLCMSCVAICPTMALQDGGDKPALHFIEQNCVQCGLCEAACPEKVISLTPQ 474

Query: 88  RVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFEAIS---------ESDDTISF 138
                N +     +L++ K +    +C+ C       PF   S          +    S 
Sbjct: 475 ----INFDKAARQQLQTLK-EEAPFECIRC-----GSPFATQSMVHRMLDMVGAHSAFSA 524

Query: 139 NMDKCVLCGHC 149
           N+++  +CG C
Sbjct: 525 NIERLKMCGDC 535



 Score = 39.3 bits (90), Expect = 1e-07
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 11  KYFDNLDINFELDSQYISNK-IEINPEICIL-------CNRCLEVCPVTAISSNFPEVPD 62
           K  D L+   EL  Q+   + ++IN ++C         CNRCL  CP  AISS   ++  
Sbjct: 157 KLADALEQLPELVGQFDKPRYVKINADLCAHDRNGINGCNRCLNFCPADAISSVAKKIEV 216

Query: 63  IDNKCVYCNTCVETCPVDAI 82
               C    +C   CP  AI
Sbjct: 217 DPYLCHGAGSCASACPTGAI 236



 Score = 30.0 bits (66), Expect = 6e-05
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 27  ISNKIEINPEICILCNRCLEVCPVTAISSNFP 58
           ++ KIE++P +C     C   CP  AI  + P
Sbjct: 210 VAKKIEVDPYLCHGAGSCASACPTGAIGYDLP 241



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 17/42 (40%)

Query: 117 CLVCTKNCPFEAISESDDTISFNMDKCVLCGHCEEICPAKAI 158
           C  C   CP +AIS     I  +   C   G C   CP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKKIEVDPYLCHGAGSCASACPTGAI 236



 Score = 27.3 bits (59), Expect = 4e-04
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 70  CNTCVETCPVDAIKITKTRVRVE 92
           CN C+  CP DAI     ++ V+
Sbjct: 195 CNRCLNFCPADAISSVAKKIEVD 217