Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021

 Score = 55.1 bits (131), Expect = 1e-12
 Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 26/133 (19%)

Query: 221 CIGCGNCVDVCPGSI-----DLERLK--VTSCIKSGKCLEVCPTTAIRIGVPEKITKRTA 273
           C GCG C D CP  I     D   L   +  C   G+C E+CP            T R+ 
Sbjct: 37  CTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVF--------TGRSQ 88

Query: 274 ECYIVDE--EKCIG-----CRICYRSCNVPEAILISKETN---LPYINPEYCVRCGLCQN 323
           +   V    E C+      C+ C  +C   EAI          LP +N E C  CG C +
Sbjct: 89  QFPHVAMIGESCLARNRTDCQACRDACPT-EAIRFRPRAGGPFLPELNEELCTGCGACLS 147

Query: 324 ACPVDAIDYLKTE 336
            CPV AI   + E
Sbjct: 148 VCPVAAIGIREVE 160



 Score = 54.7 bits (130), Expect = 2e-12
 Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 29/135 (21%)

Query: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFD--AGSCINCGNCVESCPTNVLEMGTL 104
           E C  C  C ++CP+  I +        + P  D     C  CG C E CP  V    T 
Sbjct: 35  EACTGCGRCADACPTHIIRVI------DDRPALDFFIAECTFCGQCAELCPEPVF---TG 85

Query: 105 RKEAKELLWNVPKIINLLIDEEVCVS-----CGTCENACPVDAISHNNTG----LYEIDV 155
           R +         +  ++ +  E C++     C  C +ACP +AI          L E++ 
Sbjct: 86  RSQ---------QFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNE 136

Query: 156 NLCVSCKNCLKACPV 170
            LC  C  CL  CPV
Sbjct: 137 ELCTGCGACLSVCPV 151



 Score = 52.4 bits (124), Expect = 9e-12
 Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 49/157 (31%)

Query: 83  SCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDA 142
           +C  CG C ++CPT+++ +   R             ++  I E  C  CG C   CP   
Sbjct: 36  ACTGCGRCADACPTHIIRVIDDRPA-----------LDFFIAE--CTFCGQCAELCPEPV 82

Query: 143 ISHNNTGLYEIDV--NLCVS-----CKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFD 195
            +  +     + +    C++     C+ C  ACP E                    I+F 
Sbjct: 83  FTGRSQQFPHVAMIGESCLARNRTDCQACRDACPTEA-------------------IRF- 122

Query: 196 RERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP 232
           R R G  F         +P +   LC GCG C+ VCP
Sbjct: 123 RPRAGGPF---------LPELNEELCTGCGACLSVCP 150



 Score = 43.5 bits (101), Expect = 4e-09
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 16/96 (16%)

Query: 244 SCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAILISK 303
           +C   G+C + CPT  IR+     I  R A  + + E  C  C  C   C  PE +   +
Sbjct: 36  ACTGCGRCADACPTHIIRV-----IDDRPALDFFIAE--CTFCGQCAELC--PEPVFTGR 86

Query: 304 ETNLPYIN--PEYCVR-----CGLCQNACPVDAIDY 332
               P++    E C+      C  C++ACP +AI +
Sbjct: 87  SQQFPHVAMIGESCLARNRTDCQACRDACPTEAIRF 122



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 18/101 (17%)

Query: 48  KCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCI-----NCGNCVESCPTNVLEMG 102
           +C  C  C E CP    +   +++F     + +  SC+     +C  C ++CPT  +   
Sbjct: 67  ECTFCGQCAELCPEPVFTGR-SQQFPHVAMIGE--SCLARNRTDCQACRDACPTEAIRF- 122

Query: 103 TLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI 143
             R  A      +P++     +EE+C  CG C + CPV AI
Sbjct: 123 --RPRAGGPF--LPEL-----NEELCTGCGACLSVCPVAAI 154



 Score = 26.6 bits (57), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 313 EYCVRCGLCQNACPVDAIDYLKTETSEDLY 342
           E C  CG C +ACP   I  +    + D +
Sbjct: 35  EACTGCGRCADACPTHIIRVIDDRPALDFF 64



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 47  EKCISCSACKESCPSDAISM 66
           E C  C AC   CP  AI +
Sbjct: 137 ELCTGCGACLSVCPVAAIGI 156