Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 241 a.a., quinol dehydrogenase periplasmic component (RefSeq) from Shewanella amazonensis SB2B

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 31/141 (21%)

Query: 219 SLCIGCGNCVDVCP---------------GSIDLERLKVT-SCIKSGKCLEVCPTTAIRI 262
           S C+ CG CV+ CP               G+   E  KV         C++ CP+ A+  
Sbjct: 62  SACVRCGLCVEACPYDTLKLARWFEQAPTGTPWFEARKVPCEMCDDIPCIKACPSGALEQ 121

Query: 263 GVPEKITKRTAECYIVDEEKCIG-----CRICYRSCN-VPEAILISKETN---------L 307
            + +    +     ++DE+ C+      C +CYR C  +  AI + +  N         +
Sbjct: 122 ALTDIDQAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERSRNERSGHHAMFI 181

Query: 308 PYINPEYCVRCGLCQNACPVD 328
           P +NP+ C  CG C++AC +D
Sbjct: 182 PVVNPDTCTGCGKCEHACVLD 202



 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 28/162 (17%)

Query: 44  DLPEKCISCSACKESCPSDAISM-EFNEEFKKEMPVFDAGS--CINCGN--CVESCPTNV 98
           D    C+ C  C E+CP D + +  + E+     P F+A    C  C +  C+++CP+  
Sbjct: 59  DFLSACVRCGLCVEACPYDTLKLARWFEQAPTGTPWFEARKVPCEMCDDIPCIKACPSGA 118

Query: 99  LEMGTLRKEAKELLWNVPKIINLLIDEEVCVS-----CGTCENACPV------------D 141
           LE      +  ++       I +LIDE+ C++     C  C   CP+            +
Sbjct: 119 LEQALTDIDQAKM------GIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERSRNE 172

Query: 142 AISHNNTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPELS 183
              H+   +  ++ + C  C  C  AC ++ A +    P ++
Sbjct: 173 RSGHHAMFIPVVNPDTCTGCGKCEHACVLDEAAIKVLPPHIA 214



 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 40/163 (24%)

Query: 83  SCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDA 142
           +C+ CG CVE+CP + L++    ++A       P      +  E+C     C  ACP  A
Sbjct: 63  ACVRCGLCVEACPYDTLKLARWFEQAPT---GTPWFEARKVPCEMCDDI-PCIKACPSGA 118

Query: 143 ISHNNTGLYE--------IDVNLCVS-----CKNCLKACP-VENAIVTYSEPELSEKIEI 188
           +    T + +        ID   C++     C  C + CP ++NAI           +E 
Sbjct: 119 LEQALTDIDQAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAIT----------LER 168

Query: 189 AQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVC 231
           ++N     ER G            IP + P  C GCG C   C
Sbjct: 169 SRN-----ERSGHH-------AMFIPVVNPDTCTGCGKCEHAC 199



 Score = 40.0 bits (92), Expect = 7e-08
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 37  RKIPVIFDLPEKCISCS--ACKESCPSDAISMEFNEEFKKEMPV---FDAGSCIN----- 86
           RK+P        C  C    C ++CPS A+     +  + +M +    D  +C+N     
Sbjct: 98  RKVP--------CEMCDDIPCIKACPSGALEQALTDIDQAKMGIAVLIDEKNCLNFKGLR 149

Query: 87  CGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVD 141
           C  C   CP  +    TL +   E   +    I + ++ + C  CG CE+AC +D
Sbjct: 150 CDVCYRVCPL-IDNAITLERSRNERSGHHAMFIPV-VNPDTCTGCGKCEHACVLD 202



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 315 CVRCGLCQNACPVDAI 330
           CVRCGLC  ACP D +
Sbjct: 64  CVRCGLCVEACPYDTL 79