Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 462 a.a., Ferredoxin hydrogenase (NCBI) from Rhodospirillum rubrum S1H

 Score = 51.6 bits (122), Expect = 5e-11
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 123 IDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCKNCLKACPVENAI 174
           ID E+C  CG C   CPV AI+ +    +EI+   CVSC  C+  C   ++I
Sbjct: 9   IDPELCTGCGRCVETCPVQAIAGSRGKAHEIEAAACVSCGRCVATCAAFDSI 60



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 40 PVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESC 94
          P +   PE C  C  C E+CP  AI+    +  +      +A +C++CG CV +C
Sbjct: 5  PTVTIDPELCTGCGRCVETCPVQAIAGSRGKAHE-----IEAAACVSCGRCVATC 54



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 216 IVPSLCIGCGNCVDVCPGSI------DLERLKVTSCIKSGKCLEVC 255
           I P LC GCG CV+ CP             ++  +C+  G+C+  C
Sbjct: 9   IDPELCTGCGRCVETCPVQAIAGSRGKAHEIEAAACVSCGRCVATC 54



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 14/59 (23%)

Query: 80  DAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENAC 138
           D   C  CG CVE+CP  V  +   R +A E            I+   CVSCG C   C
Sbjct: 10  DPELCTGCGRCVETCP--VQAIAGSRGKAHE------------IEAAACVSCGRCVATC 54



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 310 INPEYCVRCGLCQNACPVDAI 330
           I+PE C  CG C   CPV AI
Sbjct: 9   IDPELCTGCGRCVETCPVQAI 29



 Score = 31.6 bits (70), Expect = 5e-05
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNAC 325
           +D E C GC  C  +C  P   +         I    CV CG C   C
Sbjct: 9   IDPELCTGCGRCVETC--PVQAIAGSRGKAHEIEAAACVSCGRCVATC 54



 Score = 30.0 bits (66), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 245 CIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAILISKE 304
           C   G+C+E CP  A        I     + + ++   C+ C  C  +C   ++I  +  
Sbjct: 14  CTGCGRCVETCPVQA--------IAGSRGKAHEIEAAACVSCGRCVATCAAFDSIFDAFP 65

Query: 305 TNLP 308
           T  P
Sbjct: 66  TPRP 69