Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 238 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 25/134 (18%)

Query: 60  PSDAISMEFNEEFKKEMP-VFDAGSCINCGNCVESCPTNVLEMGTLRKE----------- 107
           P+D +  +   + KK +  V D G C  C  CV SC    +E G L  E           
Sbjct: 25  PADPVIADIRRQGKKRLAMVIDLGRCNGCKACVVSCG---IENGNLPDEHRTQVPQHSVD 81

Query: 108 --AKELLWNVPKIINLLIDEEVCVSCGTCENACPVDA-ISHNNTGLYEIDVNLCVSCKNC 164
              K+ ++N+P + N   D   CVS       CP  A       G+  +D  LC+ C  C
Sbjct: 82  LNGKQYVFNMPILCNNC-DRPSCVS------VCPTGATFKREQDGIVVVDSELCIGCNYC 134

Query: 165 LKACPVENAIVTYS 178
           ++ACP +    T+S
Sbjct: 135 IQACPYDGVRFTHS 148



 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 41/153 (26%)

Query: 37  RKIPVIFDLPEKCISCSACKESC---------------PSDAISMEFNEEFKKEMPVFDA 81
           +++ ++ DL  +C  C AC  SC               P  ++ +   +++   MP+   
Sbjct: 39  KRLAMVIDLG-RCNGCKACVVSCGIENGNLPDEHRTQVPQHSVDLN-GKQYVFNMPIL-- 94

Query: 82  GSCINCG--NCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACP 139
             C NC   +CV  CPT      T ++E   ++         ++D E+C+ C  C  ACP
Sbjct: 95  --CNNCDRPSCVSVCPTGA----TFKREQDGIV---------VVDSELCIGCNYCIQACP 139

Query: 140 VDAI--SHNNTGLYEIDVNLCV--SCKNCLKAC 168
            D +  +H+ TG  +   N C+  + +  L AC
Sbjct: 140 YDGVRFTHSATGTVD-KCNFCIQRTSRGLLPAC 171



 Score = 37.0 bits (84), Expect = 6e-07
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 21/98 (21%)

Query: 153 IDVNLCVSCKNCLKACPVENAIVTYSE----PELSEKIEIAQNI--------KFDRERL- 199
           ID+  C  CK C+ +C +EN  +        P+ S  +   Q +          DR    
Sbjct: 45  IDLGRCNGCKACVVSCGIENGNLPDEHRTQVPQHSVDLNGKQYVFNMPILCNNCDRPSCV 104

Query: 200 -----GSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP 232
                G+ FK + D I  +      LCIGC  C+  CP
Sbjct: 105 SVCPTGATFKREQDGIVVVDS---ELCIGCNYCIQACP 139



 Score = 29.6 bits (65), Expect = 9e-05
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 26/122 (21%)

Query: 221 CIGCGNCVDVCP---GSI-DLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECY 276
           C GC  CV  C    G++ D  R +V             P  ++ +   + +      C 
Sbjct: 50  CNGCKACVVSCGIENGNLPDEHRTQV-------------PQHSVDLNGKQYVFNMPILCN 96

Query: 277 IVDEEKCIGCRICYRSCNVPEAILISKETN-LPYINPEYCVRCGLCQNACPVDAIDYLKT 335
             D   C+   +C      P      +E + +  ++ E C+ C  C  ACP D + +  +
Sbjct: 97  NCDRPSCVS--VC------PTGATFKREQDGIVVVDSELCIGCNYCIQACPYDGVRFTHS 148

Query: 336 ET 337
            T
Sbjct: 149 AT 150