Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 215 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 53.5 bits (127), Expect = 5e-12
 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 16/137 (11%)

Query: 78  VFDAGSCINCGNCVESC-PTNVLEMGTLRKEAKELLWNV-----PKIINLLID---EEVC 128
           VFD   C+ CG C E+C   N L  G  R   ++    V     P       D   + V 
Sbjct: 24  VFDQNKCVGCGGCKEACNKANNLPEGRSRVLLEQQSSAVAGQACPHCGKTDCDCQRKYVR 83

Query: 129 VSCGTCENA-----CPVDAISHN-NTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPEL 182
           VSC  C+NA     CP  A   +  TG+  +D + C  CK C+ ACP  NA    SE ++
Sbjct: 84  VSCQQCQNAPCVSVCPTGAAHRDPKTGIVTMDASKCAGCKYCIAACPY-NARYINSETDV 142

Query: 183 SEKIEIAQNIKFDRERL 199
           ++  +     K  +  L
Sbjct: 143 ADNCDFCLQSKLAKGEL 159



 Score = 40.0 bits (92), Expect = 6e-08
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 38/173 (21%)

Query: 154 DVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEI 213
           D N CV C  C +AC   N +     PE   ++ + Q                     + 
Sbjct: 26  DQNKCVGCGGCKEACNKANNL-----PEGRSRVLLEQ---------------------QS 59

Query: 214 PRIVPSLCIGCGNCVDVCPGSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTA 273
             +    C  CG     C       R+    C ++  C+ VCPT A        I     
Sbjct: 60  SAVAGQACPHCGKTD--CDCQRKYVRVSCQQC-QNAPCVSVCPTGAAHRDPKTGIVT--- 113

Query: 274 ECYIVDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACP 326
               +D  KC GC+ C  +C    A  I+ ET++   N ++C++  L +   P
Sbjct: 114 ----MDASKCAGCKYCIAACPY-NARYINSETDVA-DNCDFCLQSKLAKGELP 160



 Score = 31.6 bits (70), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 28/94 (29%)

Query: 264 VPEKITKRTAECYIV--DEEKCIGCRICYRSC----NVPEA---ILISKETN------LP 308
           V E+  +  A  Y++  D+ KC+GC  C  +C    N+PE    +L+ ++++       P
Sbjct: 9   VKEQTAQDAAPHYVMVFDQNKCVGCGGCKEACNKANNLPEGRSRVLLEQQSSAVAGQACP 68

Query: 309 YINPEYC--------VRCGLCQNA-----CPVDA 329
           +     C        V C  CQNA     CP  A
Sbjct: 69  HCGKTDCDCQRKYVRVSCQQCQNAPCVSVCPTGA 102



 Score = 31.2 bits (69), Expect = 3e-05
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 50  ISCSACKES-----CPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTN 97
           +SC  C+ +     CP+ A     + + K  +   DA  C  C  C+ +CP N
Sbjct: 84  VSCQQCQNAPCVSVCPTGAA----HRDPKTGIVTMDASKCAGCKYCIAACPYN 132