Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  122 bits (307), Expect = 1e-32
 Identities = 85/295 (28%), Positives = 133/295 (45%), Gaps = 48/295 (16%)

Query: 44  DLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVF---------DAGSCINCGNCVESC 94
           D+ EKC+ C  C  +CP DA+ +  N++   EMP +         +   C+ C  C   C
Sbjct: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125

Query: 95  PTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI----------S 144
           P   +++     E K L+     +  + I ++ CV CG C   CP DAI          S
Sbjct: 126 PQCAIDVEREVPERKSLV-----LGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALS 180

Query: 145 HNNTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFK 204
            N     +ID++ CV CK C KACP  NAI       +  K  +A  IK  +  L  E K
Sbjct: 181 LNPIADIKIDLDACVYCKVCEKACP-HNAI-----EAICYKCPLASKIK--KPELYGEIK 232

Query: 205 EKSDVIAEIPRIVPSLCIGCGNCVDVCPG-SIDLER-------LKVTSCIKSGKCLEVCP 256
            ++++  +       LC+ CG C ++CP  +I++E+       +   +C   G C+ VCP
Sbjct: 233 GQTNIDKD-------LCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCP 285

Query: 257 TTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAILISKETNLPYIN 311
             A+    PEK   +     +V+++ CI C  C  SC V    +   + N+   N
Sbjct: 286 CNALVFPQPEKQGDKVPN-VVVNQDVCILCGACTHSCPVDALTVKRTKINMTEAN 339



 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 86/323 (26%), Positives = 124/323 (38%), Gaps = 70/323 (21%)

Query: 73  KKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCG 132
           +K +  +D  +C+ CG C E CPT+ +EMG L    K  + + PK    L   E CV CG
Sbjct: 21  EKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDI-DAPK----LDISEKCVLCG 75

Query: 133 TCENACPVDAI--SHNNTGL------------YEIDVNLCVSCKNCLKACPVENAIVTYS 178
            C  ACP DA+  S N+  +             E++ + CV C+ C   CP     V   
Sbjct: 76  MCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVERE 135

Query: 179 EPELSEKIEIAQNIKFDRERLGSEFKE--KSDVIAEIPRIVPSL--------------CI 222
            PE    +     IK D   L     E   +D I  IP  + +L              C+
Sbjct: 136 VPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACV 195

Query: 223 GCGNCVDVCP-----------------------GSIDLE-RLKVTSCIKSGKCLEVCPTT 258
            C  C   CP                       G I  +  +    C+  G C  +CP  
Sbjct: 196 YCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPAD 255

Query: 259 AIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAILISKE---TNLP--YINPE 313
           AI +  P +         I+DE  C  C  C   C     +    E     +P   +N +
Sbjct: 256 AIEVEKPFEGE------LIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQD 309

Query: 314 YCVRCGLCQNACPVDAIDYLKTE 336
            C+ CG C ++CPVDA+   +T+
Sbjct: 310 VCILCGACTHSCPVDALTVKRTK 332



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 32  PPERFRKIPVIFDLPEKCISCSACKESCPSDAISME 67
           P ++  K+P +    + CI C AC  SCP DA++++
Sbjct: 294 PEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTVK 329