Pairwise Alignments
Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 78.6 bits (192), Expect = 1e-19
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 46 PEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLR 105
PE CI C+ C E CP AIS F E+P D C+ C CVE+CP + +++ R
Sbjct: 35 PELCILCNRCLEVCPVTAISSNF-----PEVPDID-NKCVYCNTCVETCPVDAIKITKTR 88
Query: 106 KEAKE---LLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCK 162
++ ++ N K L + + CV C C CP AIS ++ + D++ CV C
Sbjct: 89 VRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNCPFGAISESDDNI-SFDMDKCVLCG 147
Query: 163 NCLKACPVE 171
+C + CP +
Sbjct: 148 HCEEICPAK 156
Score = 67.0 bits (162), Expect = 3e-16
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 123 IDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPEL 182
I+ E+C+ C C CPV AIS N + +ID N CV C C++ CPV+ +T + +
Sbjct: 33 INPELCILCNRCLEVCPVTAISSNFPEVPDID-NKCVYCNTCVETCPVDAIKITKTRVRV 91
Query: 183 SEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP-GSI----DL 237
+ I +N + ++L K+ C+ C C CP G+I D
Sbjct: 92 EQGNLIIEN-RLKSKKLDYNRKK---------------CVMCLVCTKNCPFGAISESDDN 135
Query: 238 ERLKVTSCIKSGKCLEVCPTTAIRI 262
+ C+ G C E+CP AI++
Sbjct: 136 ISFDMDKCVLCGHCEEICPAKAIKL 160
Score = 64.3 bits (155), Expect = 2e-15
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 23/151 (15%)
Query: 197 ERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKV-----TSCIKSGKC 251
+ L +F+ S I+ I P LCI C C++VCP + C+ C
Sbjct: 14 DNLDIKFELDSQYISNKIEINPELCILCNRCLEVCPVTAISSNFPEVPDIDNKCVYCNTC 73
Query: 252 LEVCPTTAIRIGVPEKITKRTAECYIVDE------------EKCIGCRICYRSCNVPEAI 299
+E CP AI+I K R + ++ E +KC+ C +C ++C P
Sbjct: 74 VETCPVDAIKI---TKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTKNC--PFGA 128
Query: 300 LISKETNLPYINPEYCVRCGLCQNACPVDAI 330
+ + N+ + + + CV CG C+ CP AI
Sbjct: 129 ISESDDNISF-DMDKCVLCGHCEEICPAKAI 158
Score = 55.8 bits (133), Expect = 8e-13
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 27/116 (23%)
Query: 40 PVIFDLPEKCISCSACKESCPSDAI------------SMEFNEEFKKEMPVFDAGSCINC 87
P + D+ KC+ C+ C E+CP DAI ++ K + ++ C+ C
Sbjct: 58 PEVPDIDNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMC 117
Query: 88 GNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI 143
C ++CP + E+ + N+ D + CV CG CE CP AI
Sbjct: 118 LVCTKNCPFGAI------SESDD---------NISFDMDKCVLCGHCEEICPAKAI 158
Score = 54.3 bits (129), Expect = 2e-12
Identities = 46/193 (23%), Positives = 65/193 (33%), Gaps = 67/193 (34%)
Query: 64 ISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLI 123
I E + ++ + CI C C+E CP + N P++ ++
Sbjct: 18 IKFELDSQYISNKIEINPELCILCNRCLEVCPVTAISS------------NFPEVPDI-- 63
Query: 124 DEEVCVSCGTCENACPVDAISHNNTGLYEIDVNL-----------------CVSCKNCLK 166
+ CV C TC CPVDAI T + NL CV C C K
Sbjct: 64 -DNKCVYCNTCVETCPVDAIKITKTRVRVEQGNLIIENRLKSKKLDYNRKKCVMCLVCTK 122
Query: 167 ACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGN 226
CP E NI FD ++ C+ CG+
Sbjct: 123 NCP------------FGAISESDDNISFDMDK----------------------CVLCGH 148
Query: 227 CVDVCPG-SIDLE 238
C ++CP +I LE
Sbjct: 149 CEEICPAKAIKLE 161
Score = 48.9 bits (115), Expect = 1e-10
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 30/115 (26%)
Query: 245 CIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVD-EEKCIGCRICYRSCNVPEAILISK 303
CI +CLEVCP TAI PE + D + KC+ C C +C V +AI I+K
Sbjct: 38 CILCNRCLEVCPVTAISSNFPE----------VPDIDNKCVYCNTCVETCPV-DAIKITK 86
Query: 304 -----------------ETNLPYINPEYCVRCGLCQNACPVDAIDYLKTETSEDL 341
L Y N + CV C +C CP AI S D+
Sbjct: 87 TRVRVEQGNLIIENRLKSKKLDY-NRKKCVMCLVCTKNCPFGAISESDDNISFDM 140
Score = 44.7 bits (104), Expect = 2e-09
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 21 TNAKSEKESFIPPERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFD 80
T + E+ + I R + + ++ +KC+ C C ++CP AIS E ++ FD
Sbjct: 87 TRVRVEQGNLIIENRLKSKKLDYNR-KKCVMCLVCTKNCPFGAIS-ESDDNIS-----FD 139
Query: 81 AGSCINCGNCVESCPTNVLEM 101
C+ CG+C E CP +++
Sbjct: 140 MDKCVLCGHCEEICPAKAIKL 160
Score = 39.7 bits (91), Expect = 6e-08
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLKT 335
++ E CI C C C P + S +P I+ + CV C C CPVDAI KT
Sbjct: 33 INPELCILCNRCLEVC--PVTAISSNFPEVPDIDNK-CVYCNTCVETCPVDAIKITKT 87
Score = 32.0 bits (71), Expect = 1e-05
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 41 VIFDLPEKCISCSACKESCPSDAISME 67
+ FD+ +KC+ C C+E CP+ AI +E
Sbjct: 136 ISFDM-DKCVLCGHCEEICPAKAIKLE 161