Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 205 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 58/222 (26%), Positives = 81/222 (36%), Gaps = 74/222 (33%)

Query: 84  CINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAI 143
           CI CG CV+ CPTN + +   R                   + +C  CG C N CPVDAI
Sbjct: 46  CICCGLCVDVCPTNAISVFKFR-------------------DIICEHCGACLNVCPVDAI 86

Query: 144 SHNNTGLYEIDVNLCVSCKNCLKACPV---ENAIVTYSEPELSEKIEIAQNIKFDRERLG 200
             N    + +D   C+ C  C   C +   +N I   + PE++ +               
Sbjct: 87  EKNR---FSVDSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNE--------------- 128

Query: 201 SEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCP-GSIDLERLKV---TSCIKSGKCLEVCP 256
                               C  C  C+  CP  +I  E  K+   + C    KC+E CP
Sbjct: 129 --------------------CNNCKLCIQKCPQKAISFEDGKISINSKCNLCLKCVEFCP 168

Query: 257 TTAIRI---GVPEKITKRTAECYIVDEEKCIGCRICYRSCNV 295
             A++     +  KI K       VD   CI C+ C   C V
Sbjct: 169 LNALKSPKDSLKSKIIK-------VDLNSCIFCKDCEEICPV 203



 Score = 69.7 bits (169), Expect = 7e-17
 Identities = 41/113 (36%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 221 CIGCGNCVDVCP-GSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVD 279
           CI CG CVDVCP  +I + + +   C   G CL VCP  AI               + VD
Sbjct: 46  CICCGLCVDVCPTNAISVFKFRDIICEHCGACLNVCPVDAIE-----------KNRFSVD 94

Query: 280 EEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDY 332
            EKCI C +C   C +P         N+P +  E C  C LC   CP  AI +
Sbjct: 95  SEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNE-CNNCKLCIQKCPQKAISF 146



 Score = 68.9 bits (167), Expect = 1e-16
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 31/188 (16%)

Query: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
           E CI C  C + CP++AIS+     FK     F    C +CG C+  CP + +E      
Sbjct: 44  EDCICCGLCVDVCPTNAISV-----FK-----FRDIICEHCGACLNVCPVDAIEKN---- 89

Query: 107 EAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDV-NLCVSCKNCL 165
                           +D E C+ CG C   C +  + +    L   +V N C +CK C+
Sbjct: 90  -------------RFSVDSEKCIKCGVCSIFCTIPILKNEIPVLNVPEVTNECNNCKLCI 136

Query: 166 KACPVENAIVTYSEPELSEKIEIAQNIK-FDRERLGSEFKEKSDVIAEIPRIVPSLCIGC 224
           + CP     +++ + ++S   +    +K  +   L +    K  + ++I ++  + CI C
Sbjct: 137 QKCP--QKAISFEDGKISINSKCNLCLKCVEFCPLNALKSPKDSLKSKIIKVDLNSCIFC 194

Query: 225 GNCVDVCP 232
            +C ++CP
Sbjct: 195 KDCEEICP 202



 Score = 51.2 bits (121), Expect = 3e-11
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 21/106 (19%)

Query: 38  KIPVIFDLPE---KCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESC 94
           +IPV+ ++PE   +C +C  C + CP  AIS E       +  +     C  C  CVE C
Sbjct: 116 EIPVL-NVPEVTNECNNCKLCIQKCPQKAISFE-------DGKISINSKCNLCLKCVEFC 167

Query: 95  PTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACPV 140
           P N L      K  K+ L +  KII   +D   C+ C  CE  CPV
Sbjct: 168 PLNAL------KSPKDSLKS--KIIK--VDLNSCIFCKDCEEICPV 203



 Score = 37.4 bits (85), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 281 EKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAID 331
           E CI C +C   C    AI + K  ++       C  CG C N CPVDAI+
Sbjct: 44  EDCICCGLCVDVCPT-NAISVFKFRDI------ICEHCGACLNVCPVDAIE 87



 Score = 33.1 bits (74), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 290 YRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYLK 334
           +RS   PE I    ET  P +  E C+ CGLC + CP +AI   K
Sbjct: 26  FRSYKNPEII---GETTNPEL--EDCICCGLCVDVCPTNAISVFK 65