Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  119 bits (298), Expect = 2e-31
 Identities = 92/301 (30%), Positives = 133/301 (44%), Gaps = 57/301 (18%)

Query: 46  PEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLR 105
           P KC  C  C + CP++ + +E N++ K        G C+ C  CVE+CP + + M  + 
Sbjct: 66  PTKCDLCGECVKVCPNN-LKIE-NDKLK--------GFCVGCMKCVEACPDDYVGMEGVV 115

Query: 106 KEAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCKNCL 165
           + AK  +  +PK    +   E CV CG C + CPV A+S        +D N C+ C  C 
Sbjct: 116 EPAKRNI-TLPK--EPIAVTEDCVGCGVCISECPVGALSIEGEKAV-VDKNSCIYCSICA 171

Query: 166 KACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCG 225
           + CP  NAI             +A      R++   +F   SD           LCIGCG
Sbjct: 172 QTCPW-NAIF------------VAGKKSPKRDKNIVKFSVDSD-----------LCIGCG 207

Query: 226 NCVDVCPGSI----DLERLKVTSCIKSGKCLEVCPTTAIRI----GVPEKITKRTAECYI 277
           +C D CP  +    ++  +    C   G C+  CP  AI +    G P+ IT    E  +
Sbjct: 208 DCTDKCPRDLIVLNEMVAVPPKGCPACGLCMAACPVDAIELVVEYGSPKPITD---EGIV 264

Query: 278 VDEEKCIGCRICYRSC-----NV--PEAILISKETNLPYINP-EYCVRCGLCQNACPVDA 329
            DEEKC  C  C   C     NV  P+ + +         N  + C+RCG C  +CP DA
Sbjct: 265 WDEEKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDA 324

Query: 330 I 330
           +
Sbjct: 325 L 325



 Score =  118 bits (296), Expect = 3e-31
 Identities = 89/294 (30%), Positives = 126/294 (42%), Gaps = 62/294 (21%)

Query: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
           E C  C AC+ SCP++A+ +     FK          C  CGNCV +CP + L +     
Sbjct: 7   EDCYMCKACENSCPTEALKLN---PFKV---------CQLCGNCVNACPNDALNL----- 49

Query: 107 EAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVN-LCVSCKNCL 165
             +E+  N   I  +      C  CG C   CP      NN  +    +   CV C  C+
Sbjct: 50  --REIELNGKTIKQIEYFPTKCDLCGECVKVCP------NNLKIENDKLKGFCVGCMKCV 101

Query: 166 KACPVENAIVTYSEPELSEKIEIAQ-NIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGC 224
           +ACP +          +   +E A+ NI   +E                P  V   C+GC
Sbjct: 102 EACPDDYV-------GMEGVVEPAKRNITLPKE----------------PIAVTEDCVGC 138

Query: 225 GNCVDVCP-GSIDLERLKVT----SCIKSGKCLEVCPTTAIRIGVPEKITKRTAEC--YI 277
           G C+  CP G++ +E  K      SCI    C + CP  AI +   +K  KR      + 
Sbjct: 139 GVCISECPVGALSIEGEKAVVDKNSCIYCSICAQTCPWNAIFVA-GKKSPKRDKNIVKFS 197

Query: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAID 331
           VD + CIGC  C   C  P  +++  E  +  + P+ C  CGLC  ACPVDAI+
Sbjct: 198 VDSDLCIGCGDCTDKC--PRDLIVLNE--MVAVPPKGCPACGLCMAACPVDAIE 247



 Score =  103 bits (256), Expect = 1e-26
 Identities = 80/304 (26%), Positives = 117/304 (38%), Gaps = 75/304 (24%)

Query: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
           E C+ C  C   CP  A+S+E       E  V D  SCI C  C ++CP N + +   + 
Sbjct: 133 EDCVGCGVCISECPVGALSIE------GEKAVVDKNSCIYCSICAQTCPWNAIFVAGKKS 186

Query: 107 EAKELLWNVPKIINLLIDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVSCKNCLK 166
             ++       I+   +D ++C+ CG C + CP D I  N   +  +    C +C  C+ 
Sbjct: 187 PKRD-----KNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNE--MVAVPPKGCPACGLCMA 239

Query: 167 ACPVE--NAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGC 224
           ACPV+    +V Y  P    K    + I +D E+                      C  C
Sbjct: 240 ACPVDAIELVVEYGSP----KPITDEGIVWDEEK----------------------CAYC 273

Query: 225 GNCVDVCPGS---------IDLERLKVTS-------CIKSGKCLEVCPTTAIRIGVPEKI 268
           G C   CP +         +++   K T        CI+ G C++ CP  A+RIG   KI
Sbjct: 274 GPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIG---KI 330

Query: 269 TKRTAECYIVD--EEKCIGCRICYRSCNVPEAILISKETNLPYINPE-----YCVRCGLC 321
                E   ++     C  C  C  +C      L  K        PE     +CV C  C
Sbjct: 331 IHDGKEYERIEFSPNLCDSCGKCIETCPYDMLNLTGK--------PEKPLEGFCVMCLKC 382

Query: 322 QNAC 325
             AC
Sbjct: 383 IEAC 386



 Score = 79.7 bits (195), Expect = 1e-19
 Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 67/245 (27%)

Query: 33  PERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVE 92
           P+R + I       + CI C  C + CP D I +        EM       C  CG C+ 
Sbjct: 187 PKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL-------NEMVAVPPKGCPACGLCMA 239

Query: 93  SCPTNVLEMGTLRKEAKELLWNVPKII---NLLIDEEVCVSCGTCENACPVDAISHNNTG 149
           +CP + +E+         + +  PK I    ++ DEE C  CG C   CP +AI+  N  
Sbjct: 240 ACPVDAIEL--------VVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAINVVNPK 291

Query: 150 LYEI----------DVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERL 199
             E+          +  +C+ C  C+++CP             ++ + I + I   +E  
Sbjct: 292 GLEMPSRKKTEKANEFKMCIRCGACVQSCP-------------NDALRIGKIIHDGKEYE 338

Query: 200 GSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKVTS---------CIKSGK 250
             EF              P+LC  CG C++ CP     + L +T          C+   K
Sbjct: 339 RIEFS-------------PNLCDSCGKCIETCP----YDMLNLTGKPEKPLEGFCVMCLK 381

Query: 251 CLEVC 255
           C+E C
Sbjct: 382 CIEAC 386



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 278 VDEEKCIGCRICYRSCNVPEAILISKETNLPYINP-EYCVRCGLCQNACPVDAIDYLKTE 336
           ++ E C  C+ C  SC           T    +NP + C  CG C NACP DA++  + E
Sbjct: 4   INTEDCYMCKACENSC----------PTEALKLNPFKVCQLCGNCVNACPNDALNLREIE 53