Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 244 a.a., iron-sulfur cluster-binding protein NapG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 38/184 (20%)

Query: 219 SLCIGCGNCVDVCP-GSIDLER----------------LKVTSCIKSGKCLEVCPTTAIR 261
           S C+ CG CV+ CP  ++ L R                +    C +   C++ CP+ A+ 
Sbjct: 65  SACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMC-EDIPCIKACPSGALD 123

Query: 262 IGVPEKITKRTAECYIVDEEKCIG-----CRICYRSCN-VPEAILISKETN--------- 306
             +      +     ++DE+ C+      C +CYR C  +  AI + ++ N         
Sbjct: 124 PQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQHSDHHAMF 183

Query: 307 LPYINPEYCVRCGLCQNACPVD--AIDYLKTETSEDLYSKRKIRDEFESILHSDLEEFTK 364
           LP +N + C  CG C++AC +D  AI  L T  +     K    D + +   + LE   K
Sbjct: 184 LPTVNSDTCTGCGKCEHACVLDTAAIKVLPTALA---LGKSAEHDTYLNTEETTLEMLNK 240

Query: 365 NYVL 368
              L
Sbjct: 241 GLTL 244



 Score = 49.7 bits (117), Expect = 9e-11
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 28/154 (18%)

Query: 44  DLPEKCISCSACKESCPSDAISM-EFNEEFKKEMPVFDAG--SCINCGN--CVESCPTNV 98
           D    C+ C  C E+CP D +++  + +      P F A    C  C +  C+++CP+  
Sbjct: 62  DFLSACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMCEDIPCIKACPSGA 121

Query: 99  LEMGTLRKEAKELLWNVPKIINLLIDEEVCVS-----CGTCENACPV--DAIS------- 144
           L+         E + +    I +LIDE+ C++     C  C   CP+  +AI+       
Sbjct: 122 LD------PQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQ 175

Query: 145 ---HNNTGLYEIDVNLCVSCKNCLKACPVENAIV 175
              H+   L  ++ + C  C  C  AC ++ A +
Sbjct: 176 HSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAAI 209



 Score = 43.1 bits (100), Expect = 8e-09
 Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 43/186 (23%)

Query: 83  SCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENACP--- 139
           +C+ CG CVE+CP + L   TL +         P      I  E+C     C  ACP   
Sbjct: 66  ACVRCGLCVEACPYDTL---TLARWFDGAATGTPFFTARHIPCEMCEDI-PCIKACPSGA 121

Query: 140 ----VDAISHNNTGL-YEIDVNLCVS-----CKNCLKACP-VENAIVTYSEPELSEKIEI 188
               ++ IS    G+   ID   C++     C  C + CP ++NAI           +E 
Sbjct: 122 LDPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAIT----------LER 171

Query: 189 AQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKV-TSCIK 247
            +N   D   +             +P +    C GCG C   C   +D   +KV  + + 
Sbjct: 172 QRNQHSDHHAM------------FLPTVNSDTCTGCGKCEHAC--VLDTAAIKVLPTALA 217

Query: 248 SGKCLE 253
            GK  E
Sbjct: 218 LGKSAE 223