Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 235 a.a., formate-dependent nitrite reductase, nrfC protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 22/132 (16%)

Query: 78  VFDAGSCINCGNCVESC-PTNVLEMGTLRKEAKELLWNV-----PKIINLLIDEE---VC 128
           VFD   C+ CG+C  +C   N L  G  R   ++    V     P    ++ D E   V 
Sbjct: 44  VFDQNKCVGCGDCKTACNQANNLPAGVSRVILEQQSGRVEGQACPHCGKMVCDCERKFVR 103

Query: 129 VSCGTCENA-----CPVDAISHN-NTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPEL 182
           VSC  C+NA     CP  A   +  TG+  +D + C  CK C+ ACP       Y+   +
Sbjct: 104 VSCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACP-------YNARLI 156

Query: 183 SEKIEIAQNIKF 194
           +   ++A N  F
Sbjct: 157 NNNTDVADNCDF 168



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 49/200 (24%)

Query: 154 DVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEI 213
           D N CV C +C  AC   N +     P    ++ + Q                     + 
Sbjct: 46  DQNKCVGCGDCKTACNQANNL-----PAGVSRVILEQ---------------------QS 79

Query: 214 PRIVPSLCIGCGNCVDVCPGSIDLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKRTA 273
            R+    C  CG  V  C       R+    C K+  C+ VCPT A           R A
Sbjct: 80  GRVEGQACPHCGKMV--CDCERKFVRVSCQQC-KNAPCVTVCPTGAAH---------RDA 127

Query: 274 ECYIV--DEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGL-------CQNA 324
           +  IV  D  KC GC+ C  +C    A LI+  T++   N ++C+   L       C  +
Sbjct: 128 KTGIVTMDASKCAGCKYCIGACPY-NARLINNNTDVA-DNCDFCLHSKLSKGELPACVQS 185

Query: 325 CPVDAIDYLKTETSEDLYSK 344
           C  DA+ +      +   SK
Sbjct: 186 CKYDALIFGDANDPQSYVSK 205



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 121 LLIDEEVCVSCGTCENAC------PVD---AISHNNTGLYEIDVNLCVSCKNCLKACPVE 171
           ++ D+  CV CG C+ AC      P      I    +G   ++   C  C   +  C  +
Sbjct: 43  MVFDQNKCVGCGDCKTACNQANNLPAGVSRVILEQQSG--RVEGQACPHCGKMVCDCERK 100

Query: 172 NAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEIPRIVPSLCIGCGNCVDVC 231
              V+  + + +  + +       R           D    I  +  S C GC  C+  C
Sbjct: 101 FVRVSCQQCKNAPCVTVCPTGAAHR-----------DAKTGIVTMDASKCAGCKYCIGAC 149

Query: 232 P 232
           P
Sbjct: 150 P 150



 Score = 27.7 bits (60), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 277 IVDEEKCIGCRICYRSC----NVPEAI-LISKETNLPYINPEYCVRCG 319
           + D+ KC+GC  C  +C    N+P  +  +  E     +  + C  CG
Sbjct: 44  VFDQNKCVGCGDCKTACNQANNLPAGVSRVILEQQSGRVEGQACPHCG 91