Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)

Query: 49  CISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEA 108
           C+    C E CP DA+ +E        +   D   C  CG C+ +CP N LE+  +R   
Sbjct: 140 CLGLGDCVEVCPFDALHIE------NGLTHVDLAKCTGCGVCINACPRNTLELIPVRARV 193

Query: 109 KELLWNVPKIINLL-IDEEVCVSCGTCENACPVDAISHNNTGLYEIDVNLCVS----CKN 163
             +     K+  ++ + E  C++CG C  ACP  AIS   TG  EID   C+S    C  
Sbjct: 194 AVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAIS-QETGRIEIDQKKCLSYGPDCNE 252

Query: 164 -CLKACP 169
            C+ ACP
Sbjct: 253 ACVTACP 259



 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 32/114 (28%)

Query: 48  KCISCSACKESCPSD-----------AISMEFNEEFKKEMPVFDAGSCINCGNCVESCPT 96
           KC  C  C  +CP +           A+     E+ K  M V + G CINCG CV++CP 
Sbjct: 168 KCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVG-CINCGKCVKACPA 226

Query: 97  NVLEMGTLRKEAKELLWNVPKIINLLIDEEVCVSCG-----TCENACPVDAISH 145
           + +   T R E               ID++ C+S G      C  ACP + + H
Sbjct: 227 HAISQETGRIE---------------IDQKKCLSYGPDCNEACVTACPRNIMRH 265



 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 221 CIGCGNCVDVCPGSI-----DLERLKVTSCIKSGKCLEVCPTTAI-------RIGVPEKI 268
           C+G G+CV+VCP         L  + +  C   G C+  CP   +       R+ V    
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCST 199

Query: 269 TKRTAECYIVDEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCG-----LCQN 323
            ++      V E  CI C  C ++C    A  IS+ET    I+ + C+  G      C  
Sbjct: 200 KEKLKAVMEVCEVGCINCGKCVKAC---PAHAISQETGRIEIDQKKCLSYGPDCNEACVT 256

Query: 324 ACP 326
           ACP
Sbjct: 257 ACP 259



 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 22/100 (22%)

Query: 244 SCIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRSC--NVPE---- 297
           SC+  G C+EVCP  A+ I     +T        VD  KC GC +C  +C  N  E    
Sbjct: 139 SCLGLGDCVEVCPFDALHI--ENGLTH-------VDLAKCTGCGVCINACPRNTLELIPV 189

Query: 298 ----AILISKETNLPYINPEY---CVRCGLCQNACPVDAI 330
               A++ S +  L  +       C+ CG C  ACP  AI
Sbjct: 190 RARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAI 229



 Score = 32.7 bits (73), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 283 CIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAIDYL 333
           C+G   C   C   +A+ I  E  L +++   C  CG+C NACP + ++ +
Sbjct: 140 CLGLGDCVEVCPF-DALHI--ENGLTHVDLAKCTGCGVCINACPRNTLELI 187