Pairwise Alignments

Query, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 235 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score = 56.2 bits (134), Expect = 9e-13
 Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 16/137 (11%)

Query: 78  VFDAGSCINCGNCVESC-PTNVLEMGTLRKEAKELLWNV-----PKIINLLIDEE---VC 128
           VFD   C+ CG+C  +C   N L  G  R   ++    V     P    +  D E   V 
Sbjct: 44  VFDQNKCVGCGDCKTACNQANQLPEGKSRVLLEQQSGRVEGQPCPHCGKMSCDCERKFVR 103

Query: 129 VSCGTCENA-----CPVDAISHN-NTGLYEIDVNLCVSCKNCLKACPVENAIVTYSEPEL 182
           VSC  C+NA     CP  A   +  TG+  +D + C  CK C+ ACP  NA    S+ ++
Sbjct: 104 VSCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPY-NARYINSDTDV 162

Query: 183 SEKIEIAQNIKFDRERL 199
           ++  +   N K  +  L
Sbjct: 163 ADNCDFCLNSKLAKGEL 179



 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 55/203 (27%)

Query: 154 DVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIAEI 213
           D N CV C +C  AC   N +     PE   ++ + Q                     + 
Sbjct: 46  DQNKCVGCGDCKTACNQANQL-----PEGKSRVLLEQ---------------------QS 79

Query: 214 PRIVPSLCIGCGNCVDVCPGSIDLERLKV-TSC--IKSGKCLEVCPTTAIRIGVPEKITK 270
            R+    C  CG        S D ER  V  SC   K+  C+ VCPT A           
Sbjct: 80  GRVEGQPCPHCGKM------SCDCERKFVRVSCQQCKNAPCVTVCPTGAAH--------- 124

Query: 271 RTAECYIV--DEEKCIGCRICYRSCNVPEAILISKETNLPYINPEYCVRCGL-------C 321
           R A+  IV  D  KC GC+ C  +C    A  I+ +T++   N ++C+   L       C
Sbjct: 125 RDAKTGIVTMDASKCAGCKYCIGACPY-NARYINSDTDVA-DNCDFCLNSKLAKGELPAC 182

Query: 322 QNACPVDAIDYLKTETSEDLYSK 344
             +C  DA+ +      +   SK
Sbjct: 183 VQSCKYDALIFGDANDPQSYVSK 205



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 277 IVDEEKCIGCRICYRSCN----VPEA---ILISKETNLPYINPEYCVRCGLCQNAC 325
           + D+ KC+GC  C  +CN    +PE    +L+ +++    +  + C  CG     C
Sbjct: 44  VFDQNKCVGCGDCKTACNQANQLPEGKSRVLLEQQSG--RVEGQPCPHCGKMSCDC 97



 Score = 27.3 bits (59), Expect = 4e-04
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 121 LLIDEEVCVSCGTCENAC 138
           ++ D+  CV CG C+ AC
Sbjct: 43  MVFDQNKCVGCGDCKTAC 60