Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 396 a.a., NADH dehydrogenase subunit D from Sinorhizobium meliloti 1021

 Score =  115 bits (289), Expect = 2e-30
 Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 39/382 (10%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +  GP HP     LR+ L ++GE V+  +  +G +HRG E+++E K YL+ I   +R+  
Sbjct: 11  INFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDY 70

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           +       +FA  +E +   +VP + + +RV+  E+ RI SHL+      + +   T  +
Sbjct: 71  VAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183
           W    RE +M   E   G R++  +   GGV  DL  ++++ I   ID F + V +I E+
Sbjct: 131 WGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPHQLVEDIGNWIDPFLKTVDDIDEL 190

Query: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKP 239
                +   R+  IG +  ++      +G + R SG   + W +R    +E Y  L F  
Sbjct: 191 LTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSG---AAWDLRRSQPYECYSDLEFDI 247

Query: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESS-----------------GIVRNK 282
                GD + R ++R  E+  S  ++R+ ++     +                 G ++  
Sbjct: 248 PIGKNGDCFDRYLIRMIEMRQSARIMRQCVDRLLGDAKIGPVSSLDGKIVPPKRGEMKRS 307

Query: 283 AEIRATEGEWYNEAHR---GEVY---------YKIAITDGGLIK--RIIIRTPTVMNLEA 328
            E      + Y E +    GEVY         + + +   G  K  R  IR P   +L+A
Sbjct: 308 MEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAPGYAHLQA 367

Query: 329 YKYMIKDCPTIADAVATYTSID 350
             ++ +    +AD  A   S+D
Sbjct: 368 MDFLCRG-HQLADVSAVLGSLD 388