Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

 Score =  203 bits (516), Expect = 7e-57
 Identities = 121/357 (33%), Positives = 196/357 (54%), Gaps = 3/357 (0%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +P+GP+H  L+EP+  ++ V+GE V   +I  G+VHRGIE +   ++  + I L+ERVC 
Sbjct: 6   IPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCS 65

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           +CS  H Q++   +E++  + VP +A+YLRVI  E +R+ SH+   A+    +  ++L +
Sbjct: 66  LCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFM 125

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKN-IIE 182
            ++  RE + D  E + GNR+++    +GGV+ DL+K+  D    ++D+ E  +++ II 
Sbjct: 126 HVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIP 185

Query: 183 VFETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASG-IPESDWRIRHETYKALNFKPDW 241
           +++T P I  R++ IG +   + +     GPVAR SG   +   +  +  Y  L+F+   
Sbjct: 186 LYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMAL 245

Query: 242 RNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNKAEIRATEGEWYNEAHRGEV 301
              GD ++R MVR  E LTS+ LIR+ L    +          I A E     EA RGE+
Sbjct: 246 GEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEAPRGEL 305

Query: 302 YYKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSIDPCVSCTER 358
            Y +        +R+  R PT MN +A   M+     I+D      SIDPC+SCTER
Sbjct: 306 IYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGA-RISDIPLIVNSIDPCISCTER 361