Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 366 a.a., carbon monoxide-induced hydrogenase CooH, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  208 bits (530), Expect = 2e-58
 Identities = 122/356 (34%), Positives = 199/356 (55%), Gaps = 3/356 (0%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +P+GP+H  L+EP+  KL V+GE V+  EI  G+VHRG+E +   ++  + I L+ERVC 
Sbjct: 13  LPVGPLHVALEEPMYFKLDVDGEIVRNVEITAGHVHRGMEALAMRRNLFQNIVLTERVCS 72

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           +CS  H  ++   +E++  IEVP +A +LRV+  E++R  SHL   A+    I  ++L +
Sbjct: 73  LCSNSHPFTYCMAVEHLAGIEVPARADHLRVVAEEIKRTASHLFNVAILAHIIGFKSLFM 132

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183
            ++ VRE + D+ E + GNR+++  N +GGV+ D++ E+L  +   +D+ E + + I  +
Sbjct: 133 HVMEVREIMQDIKETVYGNRMDLAANCIGGVKYDVDAELLAMLLAGLDKVERNAREIYRI 192

Query: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWR-IRHETYKALNFKPDWR 242
           + + P++  R+  IG +   E  +    GPVAR SG+     R + +  Y  L+F     
Sbjct: 193 YASDPMVTGRTTGIGVLPPDEARRFGVVGPVARGSGLAVDVRRDVPYAAYPQLSFDVITE 252

Query: 243 NEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNKAEIRATEGEWYNEAHRGEVY 302
              D  AR +VR  EV  S+ +IR+ +    E +  V    EI A +    +EA RGE+ 
Sbjct: 253 EGCDVRARALVRLREVFESISIIRQCVATLPEGAMTV-IMPEIPAGQSVARSEAPRGELM 311

Query: 303 YKIAITDGGLIKRIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSIDPCVSCTER 358
           Y +      +  R+  R P+ MN +A   M++D   +AD      SIDPC+SCTER
Sbjct: 312 YYLRTDGTDIPNRLKWRVPSYMNWDALGVMMRDA-NVADIPLIVNSIDPCISCTER 366