Pairwise Alignments

Query, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

Subject, 404 a.a., NADH dehydrogenase I, D subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  120 bits (300), Expect = 9e-32
 Identities = 78/286 (27%), Positives = 140/286 (48%), Gaps = 7/286 (2%)

Query: 4   VPIGPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCG 63
           +  GP HP     LR+ L ++GE V+  +  +G +HRG E++ME + YL+ +   +R+  
Sbjct: 22  INFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDY 81

Query: 64  ICSYIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGI 123
           +       ++   IE +    VP +   +RV+ CE+ RI +HL+      + +   T  +
Sbjct: 82  VAPMNQEHAWCLAIEKLTGTVVPRRGSLIRVLYCEIGRILNHLLNITTQAMDVGALTPPL 141

Query: 124 WMLNVRESIMDLLELITGNRVNMGFNVVGGVRLDLNKEILDKIHKKIDEFEEDVKNIIEV 183
           W    RE +M   E   G R++  +   GGV  DL  ++LD I     EF   + +I  +
Sbjct: 142 WGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEAWSHEFPSVMDDIDGL 201

Query: 184 FETGPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIPESDWRIR----HETYKALNFKP 239
                +   R+  IG +  +EI++   +G + R SG+    W +R    +E Y   +F+ 
Sbjct: 202 LTENRIFKQRNCDIGVVTEEEILEWGYSGVMVRGSGLA---WDLRRAQPYECYDEFDFQI 258

Query: 240 DWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSGIVRNKAEI 285
                GD Y R +VR  E+  S+++I++A+    E+ G V  + ++
Sbjct: 259 PVGKNGDCYDRYLVRMQEMRESLKIIQQAIVKLRETKGDVLARGKL 304