Pairwise Alignments

Query, 286 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 372 a.a., NADH dehydrogenase subunit H from Synechococcus elongatus PCC 7942

 Score = 60.5 bits (145), Expect = 6e-14
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 19/232 (8%)

Query: 17  ILLGFHRKLMARVQCRPGPP------IIQYLIHTFKFYFKELTFPISAGNPLYVF-VALM 69
           + +   RK+ A VQ R GP       ++Q      K   KE   P  A   L+    AL+
Sbjct: 47  VTVWLERKISAAVQQRIGPEYAGPLGVLQSAADGLKLILKEDIIPAKADAFLFTIGPALV 106

Query: 70  DVMVWMSALSIAVVFE-------SSLLILIGLYILQKIVEHGCGLSSGSPYGKVGGVRSV 122
            + V++S L +    E       + + + I L  +Q I     G +S + Y  +GG+R+ 
Sbjct: 107 VIPVFLSYLIVPFGQELIITNVGAGVFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAA 166

Query: 123 F-SAAAEIPLFAAAGIVYTVTHSLIIGDIINYQAVNGPL---IFQLPICAFAVFVLVLSK 178
             S + EIPL  A   V  +++SL   DI++ Q+  G L   I++ P+     ++  L++
Sbjct: 167 AQSISYEIPLALAVLAVVMMSNSLSTIDIVDQQSGYGILGWNIWRQPVGFIIFWIAALAE 226

Query: 179 APFSPFAIVKGKD-IISGYLTEHYGPLEAIIMIGDAIAWFVLLWLFMALFLG 229
               PF + + ++ +++GY TE+ G   A+  +G  +   +   L   L+LG
Sbjct: 227 CERLPFDLPEAEEELVAGYQTEYAGMKFALFYVGSYVNLILSALLVSILYLG 278