Pairwise Alignments

Query, 286 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 300 a.a., Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 70.5 bits (171), Expect = 4e-17
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 20/298 (6%)

Query: 1   MFNGLMYALYAFLVGGILLGFHRKLMARVQCRPGPPIIQYLIHTFKFYFKE----LTFPI 56
           +FN L+    A L+ G+L    R++ AR+  R GPPI+Q      K   KE    +   +
Sbjct: 8   IFNVLLVVCAAPLLDGVL----RQVKARIHSRQGPPILQTYFDLAKLLVKEDQRGVNQLL 63

Query: 57  SAGNPLYVF--VALMDVMVWMSALSIAVVFESSLLILIGLYILQKIVEHGCGLSSGSPYG 114
            A  P+     V L  + V M+ LS  + F    ++ + +  +  +     G++SGSPY 
Sbjct: 64  FAWAPVVCMASVILSALFVPMAGLS-PLGFSGDAIVFLYVLTMAPLCMCLGGMASGSPYA 122

Query: 115 KVGGVRSVFSAAAEIPLFAAAGIVYTV-THSLIIGDIINYQAVNGPLIFQL--PICAFAV 171
             G  R + +  A  P+ A   I   +  HSL + D +N  A   P +  +   I  F +
Sbjct: 123 YAGANREIMTLMAVEPVVAICLITSGIRAHSLNLADCVNAYAAGAPALSMIIATIAFFLI 182

Query: 172 FVLVLSKAPFSPFAIVKGKDIISGYLTEHYGPLEAIIMIGDAIAWFVLLWLFMALFLG-- 229
               LSK PF         +I+ G L E+ G   A+          VL+ LF+  FL   
Sbjct: 183 LPAELSKVPFD--QAEAETEIMEGPLIEYSGRKLALFKWSFYAKQIVLITLFVEWFLPWP 240

Query: 230 --PLIVASPVLTLLGMFVLTIIISFICALTPLLAPNHSVMLQITIASLTLIDLAYRII 285
               +    + TL+ + ++ +II  I  + P    + S+     + + ++  L   ++
Sbjct: 241 HMNFVPLDILATLIKVVIVAVIIEVIAQIFPRFKIHQSIRYFYAVVAFSVGGLVLAVM 298