Pairwise Alignments

Query, 286 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis S2

Subject, 331 a.a., NADH-quinone oxidoreductase subunit H from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 39/287 (13%)

Query: 9   LYAFLVGGILLGFHRKLMARVQCRPGPPIIQYLIHT-FKFYFKELTFPISAGNPLYVFVA 67
           L AF +   + G  RK+ AR+Q R GP I        FK+ +KE   P+S    L+ F+ 
Sbjct: 22  LIAFAISTWIPGIQRKIQARIQQRKGPSISSPGFWAIFKYLYKEAKEPVSDLPKLFKFMP 81

Query: 68  LMD-VMVWMSALSIAVVFESSLLILIGLYILQKIVEHGCGLSSGSPYGKVGGVRSVFS-- 124
           L+  ++VWM      VV    L   IG+  L KI E G  +  GS    V G+R  F   
Sbjct: 82  LLSFIIVWMVLALTTVVHFHVLSNEIGIIGLLKIEEMGY-IIMGSLASTVMGIRMPFIDE 140

Query: 125 --------------------------AAAEIPLFAAAGIVYTVTHSLIIGDII--NYQAV 156
                                          P + A  + +    S+ + ++I  ++   
Sbjct: 141 CKGSGYLKTIKITLGQLSAVRAFKMITVGSFPFYLATLLPFIPHKSIFLNNLIGNSFLFT 200

Query: 157 NGPLIFQLPICAFAVFVLVLSKAPFSPFAIVKGK-DIISGYLTEHYGPLEAIIMIGDAIA 215
            G L   L   A+ +  ++++K    PF+I+  K D+I G   E+ G   A+ +    + 
Sbjct: 201 LGGLFGAL---AYIIGYIIMTKD--YPFSIMHTKADVIEGPTMEYSGKYRALYLSVKELL 255

Query: 216 WFVLLWLFMALFLGPLIVASPVLTLLGMFVLTIIISFICALTPLLAP 262
              L  LF  L+LG        +T++  F + +I   I A+     P
Sbjct: 256 MITLGSLFATLYLGIAPDILNPITIVMNFAVALIFPIISAVVSAYTP 302