Pairwise Alignments

Query, 442 a.a., preprotein translocase subunit SecY from Methanococcus maripaludis S2

Subject, 381 a.a., Preprotein translocase secY subunit (TC 3.A.5.1.1) from Pseudomonas fluorescens FW300-N1B4

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 85/396 (21%), Positives = 158/396 (39%), Gaps = 71/396 (17%)

Query: 73  TLITLGIGPIVTAGIIMQLL--VGSELISLDLSKPMNRALFQGLQKLFGIALCFLEAL-M 129
           ++  LGI P ++A IIMQL+  V  +L  L       R       +   + L  ++A+ M
Sbjct: 14  SIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKIAQYTRYGTVVLALVQAIGM 73

Query: 130 FVG--------AGAFGALTPLMTAVLVFQLALGAILIIYLDEIVSRYGIGSGIGLFIAAG 181
            +G         G FG        V V     GA+ +++L E ++  G+G+GI + I AG
Sbjct: 74  SIGLAGQGVSFTGDFG-----FHFVAVSTFVAGAMFMMWLGEQITERGVGNGISMLIFAG 128

Query: 182 VSQTIFVGTFGAEGYLWKFFTAMTAGSLWTALEYILPILGTILVFLV--VVYVESIRVEI 239
           +         G    + + F +   G +     + L  +G + V ++  VV++E  +  I
Sbjct: 129 I-------VAGLPRAIGQSFESARQGDINI---FALVAIGLLAVAIIGFVVFIERGQRRI 178

Query: 240 PLAHGR-------VKGAVGKYPIKFIYVSNLPVILAAALF---ANIQLWGMFLEKMGFPI 289
            + + +               P+K      +P I A+++    A++  W    E MG   
Sbjct: 179 AVHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGTWFGQSEGMG--- 235

Query: 290 LGHYTSGRAVDGLAYYFSTPYGISSLTADPLHAVFYTVMMVIFCILFGLFWVETSGLDAK 349
                           +      S     PL+ + ++  ++ FC     F+      + K
Sbjct: 236 ----------------WLQDISQSIAPGQPLNILLFSAGIIFFC-----FFYTALMFNPK 274

Query: 350 SMAKKLGNLDMAIKGFRKSQKSIEQRLKRYITPITVMGSAFV-------GFLAAAADFTG 402
            +A+ L      I G R  ++S  + +   +T +T+ G+ ++        FL  AA+   
Sbjct: 275 DVAENLKKSGAFIPGIRPGEQS-ARYIDGVLTRLTLFGALYMTAVCLLPQFLVVAANVPF 333

Query: 403 ALGGGTGVLLTVSIVYRLYEQLVQEQLSELHPSIAK 438
            L GGT +L+ V +V     Q+    +S  + S+ K
Sbjct: 334 YL-GGTSLLIVVVVVMDFMSQVQSHLVSHQYESLMK 368